miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 5' -63.5 NC_004684.1 + 7507 0.72 0.132321
Target:  5'- aCGCGCUGGCCGC-CgCGcGCGUgACCCGa -3'
miRNA:   3'- -GCGUGGUCGGCGuG-GU-CGCGgUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 43971 0.73 0.113047
Target:  5'- aGCAUCAGCCGUgcGCgGGCG-UACCCGg -3'
miRNA:   3'- gCGUGGUCGGCG--UGgUCGCgGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 10202 0.73 0.113047
Target:  5'- aGCGCCAGCgaGCGCUggaGGUGCCuGCCCa -3'
miRNA:   3'- gCGUGGUCGg-CGUGG---UCGCGG-UGGGc -5'
18986 5' -63.5 NC_004684.1 + 39318 0.73 0.119161
Target:  5'- aGCGCCccaguuGCCGCGCCcaGGCcgguugGCCGCCCa -3'
miRNA:   3'- gCGUGGu-----CGGCGUGG--UCG------CGGUGGGc -5'
18986 5' -63.5 NC_004684.1 + 24130 0.73 0.125582
Target:  5'- aCGCAgCAGCCGUACCcgcuGCGCacCGCuCCGg -3'
miRNA:   3'- -GCGUgGUCGGCGUGGu---CGCG--GUG-GGC- -5'
18986 5' -63.5 NC_004684.1 + 4319 0.73 0.128911
Target:  5'- uGCACCGGgCGCACUggAGUGCCuaugacACCCa -3'
miRNA:   3'- gCGUGGUCgGCGUGG--UCGCGG------UGGGc -5'
18986 5' -63.5 NC_004684.1 + 35217 0.73 0.130265
Target:  5'- -cCACCuccgaggaguggguGCCGUACCuGGUGCCGCCCGg -3'
miRNA:   3'- gcGUGGu-------------CGGCGUGG-UCGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 3606 0.72 0.132321
Target:  5'- gCGCACUgGGCCGCcgaacacgagugGCCGaagcGCGCCACCUGg -3'
miRNA:   3'- -GCGUGG-UCGGCG------------UGGU----CGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 4579 0.72 0.132321
Target:  5'- gGCGCU-GCUGCACU--CGCCACCCGg -3'
miRNA:   3'- gCGUGGuCGGCGUGGucGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 63491 0.74 0.110102
Target:  5'- gGCcuCCAGCUGCGCCuGCGCCagcagggcgGCCUGg -3'
miRNA:   3'- gCGu-GGUCGGCGUGGuCGCGG---------UGGGC- -5'
18986 5' -63.5 NC_004684.1 + 41330 0.74 0.110102
Target:  5'- gGCACCgcgaccgccgacGGCCGgGCCAagGCCACCCGg -3'
miRNA:   3'- gCGUGG------------UCGGCgUGGUcgCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 62286 0.74 0.110102
Target:  5'- aGguCCAGgCGCugcuCCAGCGCCGCgCGg -3'
miRNA:   3'- gCguGGUCgGCGu---GGUCGCGGUGgGC- -5'
18986 5' -63.5 NC_004684.1 + 55674 0.76 0.076585
Target:  5'- gCGCACCAGCUGCuggaccuacuuuuggACCAGCGCgACagCCGu -3'
miRNA:   3'- -GCGUGGUCGGCG---------------UGGUCGCGgUG--GGC- -5'
18986 5' -63.5 NC_004684.1 + 48712 0.75 0.08213
Target:  5'- uGCGgCGGCCcUGCCAGCGCUugCCGg -3'
miRNA:   3'- gCGUgGUCGGcGUGGUCGCGGugGGC- -5'
18986 5' -63.5 NC_004684.1 + 54249 0.75 0.088057
Target:  5'- gGCACCGcGCCGggacagcuccucaGCCAGCGCCgccACCCGg -3'
miRNA:   3'- gCGUGGU-CGGCg------------UGGUCGCGG---UGGGC- -5'
18986 5' -63.5 NC_004684.1 + 58727 0.75 0.088767
Target:  5'- gGCACCuGGCCGCACCGggcacgcaugaucGCGUUGCCCu -3'
miRNA:   3'- gCGUGG-UCGGCGUGGU-------------CGCGGUGGGc -5'
18986 5' -63.5 NC_004684.1 + 59557 0.75 0.091415
Target:  5'- gCGCGCCGuuGUCGCACCAGCGCaugUCCa -3'
miRNA:   3'- -GCGUGGU--CGGCGUGGUCGCGgu-GGGc -5'
18986 5' -63.5 NC_004684.1 + 8056 0.74 0.099024
Target:  5'- aGCGCCAGCaggguGCggcucauuGCCAGCGCCAucgacCCCGa -3'
miRNA:   3'- gCGUGGUCGg----CG--------UGGUCGCGGU-----GGGC- -5'
18986 5' -63.5 NC_004684.1 + 61312 0.74 0.101691
Target:  5'- aGCACC-GCCGC-CgGGcCGCCGCCCu -3'
miRNA:   3'- gCGUGGuCGGCGuGgUC-GCGGUGGGc -5'
18986 5' -63.5 NC_004684.1 + 20623 0.74 0.107228
Target:  5'- gGCACCGGCgaGCGCCAGCGCgucgagcugACCCc -3'
miRNA:   3'- gCGUGGUCGg-CGUGGUCGCGg--------UGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.