miRNA display CGI


Results 21 - 40 of 361 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 5' -63.5 NC_004684.1 + 25601 0.66 0.369104
Target:  5'- gGCGgucgagaaCAGCCGCucGCCGGuCGCCugGCCCu -3'
miRNA:   3'- gCGUg-------GUCGGCG--UGGUC-GCGG--UGGGc -5'
18986 5' -63.5 NC_004684.1 + 52904 0.66 0.369104
Target:  5'- aGCGuCCGGCCaGCACggCGGCGUgGCCg- -3'
miRNA:   3'- gCGU-GGUCGG-CGUG--GUCGCGgUGGgc -5'
18986 5' -63.5 NC_004684.1 + 49613 0.66 0.369104
Target:  5'- uCGUugCGGCUG-GCCGGUGUCcaGCCCa -3'
miRNA:   3'- -GCGugGUCGGCgUGGUCGCGG--UGGGc -5'
18986 5' -63.5 NC_004684.1 + 38944 0.66 0.369104
Target:  5'- cCGCGCguaauCGGUguugaGCGCCAGgGCCACCa- -3'
miRNA:   3'- -GCGUG-----GUCGg----CGUGGUCgCGGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 51537 0.66 0.369104
Target:  5'- gGcCACCGGgCGCAUgAGCuacgGCCcCCCGa -3'
miRNA:   3'- gC-GUGGUCgGCGUGgUCG----CGGuGGGC- -5'
18986 5' -63.5 NC_004684.1 + 12618 0.66 0.369104
Target:  5'- gCGCACCuuGCgGgCACCGGCGaggaacugaCC-CCCGa -3'
miRNA:   3'- -GCGUGGu-CGgC-GUGGUCGC---------GGuGGGC- -5'
18986 5' -63.5 NC_004684.1 + 10842 0.66 0.369104
Target:  5'- aCGCACguuGCCuGCucGCUuGCGCCGCUCGa -3'
miRNA:   3'- -GCGUGgu-CGG-CG--UGGuCGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 52314 0.66 0.369104
Target:  5'- uCGCGCgCAGCUGCGCgGuGCGCagGCCa- -3'
miRNA:   3'- -GCGUG-GUCGGCGUGgU-CGCGg-UGGgc -5'
18986 5' -63.5 NC_004684.1 + 19741 0.66 0.369104
Target:  5'- gGCACCuggAGCgugcaGUACCuGCGCgGCCUGc -3'
miRNA:   3'- gCGUGG---UCGg----CGUGGuCGCGgUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 56736 0.66 0.369104
Target:  5'- cCGCGCCAGCaCGggaACCGGCaCCagACCaCGg -3'
miRNA:   3'- -GCGUGGUCG-GCg--UGGUCGcGG--UGG-GC- -5'
18986 5' -63.5 NC_004684.1 + 58900 0.66 0.369104
Target:  5'- gGCACCGucucGCCGUcCCcGCcCCACCCc -3'
miRNA:   3'- gCGUGGU----CGGCGuGGuCGcGGUGGGc -5'
18986 5' -63.5 NC_004684.1 + 19540 0.66 0.369104
Target:  5'- aGCugCGGgUGCGCCgggcGGUGCCAggucUCCGg -3'
miRNA:   3'- gCGugGUCgGCGUGG----UCGCGGU----GGGC- -5'
18986 5' -63.5 NC_004684.1 + 17350 0.66 0.369104
Target:  5'- --gAgCAGuuGCaggACCAGCGCCGCCg- -3'
miRNA:   3'- gcgUgGUCggCG---UGGUCGCGGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 5882 0.66 0.369104
Target:  5'- aGCACCAGCCugaccgggugGCGgCGGCGCUgaucgcgcacgACCgGc -3'
miRNA:   3'- gCGUGGUCGG----------CGUgGUCGCGG-----------UGGgC- -5'
18986 5' -63.5 NC_004684.1 + 44145 0.66 0.36829
Target:  5'- aGCACCAGgCGCucgcaauacugcgGCaCGGCGaugaACCCGg -3'
miRNA:   3'- gCGUGGUCgGCG-------------UG-GUCGCgg--UGGGC- -5'
18986 5' -63.5 NC_004684.1 + 56925 0.66 0.366666
Target:  5'- -cCACCAGCUGCGCCAGgUggucguggucgaugGCCACguCCGu -3'
miRNA:   3'- gcGUGGUCGGCGUGGUC-G--------------CGGUG--GGC- -5'
18986 5' -63.5 NC_004684.1 + 11011 0.66 0.366666
Target:  5'- uGCGCCcGUCGCugguggguucaccgACCAGCGCgauCACCgCGu -3'
miRNA:   3'- gCGUGGuCGGCG--------------UGGUCGCG---GUGG-GC- -5'
18986 5' -63.5 NC_004684.1 + 13969 0.66 0.36102
Target:  5'- uGaCGgCAGUCGCgcggcgcagGCCAGCccgGCCACCUGg -3'
miRNA:   3'- gC-GUgGUCGGCG---------UGGUCG---CGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 24868 0.66 0.36102
Target:  5'- cCGUaucgACCAGCgGC-CCGGUGCCGgucuuCCCu -3'
miRNA:   3'- -GCG----UGGUCGgCGuGGUCGCGGU-----GGGc -5'
18986 5' -63.5 NC_004684.1 + 28925 0.66 0.36102
Target:  5'- aGCGCUcGUCGUACCAcauuuuGUaCCGCCCGg -3'
miRNA:   3'- gCGUGGuCGGCGUGGU------CGcGGUGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.