Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 33645 | 0.84 | 0.059836 |
Target: 5'- cUCGUCAGCGACC-CCucgccgggcaugGCGUCGCUGUg -3' miRNA: 3'- -AGCAGUCGCUGGaGG------------UGCAGCGACAg -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 51749 | 0.68 | 0.582791 |
Target: 5'- aUG-CGGCGugCUCCAgG-CGCUuGUCg -3' miRNA: 3'- aGCaGUCGCugGAGGUgCaGCGA-CAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 2154 | 0.68 | 0.593434 |
Target: 5'- gCGUCGGUGAaCUCgGCGUUGacgGUCa -3' miRNA: 3'- aGCAGUCGCUgGAGgUGCAGCga-CAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 7894 | 0.68 | 0.604108 |
Target: 5'- aCGUCAGCGugC-CCugGUgGCcGcCa -3' miRNA: 3'- aGCAGUCGCugGaGGugCAgCGaCaG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 43060 | 0.67 | 0.625515 |
Target: 5'- gCGggCGGCGACCacgUCCuCGUCGgUGUa -3' miRNA: 3'- aGCa-GUCGCUGG---AGGuGCAGCgACAg -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 39905 | 0.67 | 0.646945 |
Target: 5'- -aGUCGGCGGgUUCUuuGUCGUUGUg -3' miRNA: 3'- agCAGUCGCUgGAGGugCAGCGACAg -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 64785 | 0.66 | 0.678968 |
Target: 5'- cUGUCGGCGAagCUgaCCACGccguuggUGCUGUCg -3' miRNA: 3'- aGCAGUCGCUg-GA--GGUGCa------GCGACAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 40579 | 0.66 | 0.689571 |
Target: 5'- --cUCGGUGAUCUCCGgGUCGgUGg- -3' miRNA: 3'- agcAGUCGCUGGAGGUgCAGCgACag -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 59922 | 0.66 | 0.700122 |
Target: 5'- cUUGUCAGCGucgguguccgGCC-CCACGUgcgCGUUGUg -3' miRNA: 3'- -AGCAGUCGC----------UGGaGGUGCA---GCGACAg -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 40534 | 0.68 | 0.582791 |
Target: 5'- gUCGgcggUGGCGACCUCCGCGaccuccaggaGCUGg- -3' miRNA: 3'- -AGCa---GUCGCUGGAGGUGCag--------CGACag -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 39687 | 0.68 | 0.572187 |
Target: 5'- gCGcUCGGCcgccgagauGACCgagUCCACcUCGCUGUCg -3' miRNA: 3'- aGC-AGUCG---------CUGG---AGGUGcAGCGACAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 18889 | 0.69 | 0.509783 |
Target: 5'- ---cCAGCGcggcuCCUCCACGUCgGCgggGUCg -3' miRNA: 3'- agcaGUCGCu----GGAGGUGCAG-CGa--CAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 65975 | 0.73 | 0.313105 |
Target: 5'- cUUGgccCGGCaGGCCUCCAgGUCGCUGg- -3' miRNA: 3'- -AGCa--GUCG-CUGGAGGUgCAGCGACag -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 39017 | 0.71 | 0.403959 |
Target: 5'- gCGUCGGUaucGACCUCUACGgcucggCGgUGUCc -3' miRNA: 3'- aGCAGUCG---CUGGAGGUGCa-----GCgACAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 28692 | 0.71 | 0.413006 |
Target: 5'- aCGUCGGCGAacaCUCCcUGUCGCUc-- -3' miRNA: 3'- aGCAGUCGCUg--GAGGuGCAGCGAcag -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 45959 | 0.7 | 0.454251 |
Target: 5'- cUCGaCGGCGGCCUCCAugaccucggccaguuCGUCGUUuuugaaGUCa -3' miRNA: 3'- -AGCaGUCGCUGGAGGU---------------GCAGCGA------CAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 48291 | 0.7 | 0.479647 |
Target: 5'- aCGUCccacCGGCCUUCGCGcaccagcaguUCGCUGUCc -3' miRNA: 3'- aGCAGuc--GCUGGAGGUGC----------AGCGACAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 7726 | 0.7 | 0.489599 |
Target: 5'- cCGUgAGCcACCUgaucgguaucgCCGCGcCGCUGUCg -3' miRNA: 3'- aGCAgUCGcUGGA-----------GGUGCaGCGACAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 13142 | 0.7 | 0.489599 |
Target: 5'- aCG-CAGCG-CCU-CGCGUCGCUGa- -3' miRNA: 3'- aGCaGUCGCuGGAgGUGCAGCGACag -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 3440 | 0.69 | 0.499645 |
Target: 5'- -aGUCAGCGGCa-CCACGguguUCGCcGUCu -3' miRNA: 3'- agCAGUCGCUGgaGGUGC----AGCGaCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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