miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 3' -56.7 NC_004684.1 + 734 0.66 0.721026
Target:  5'- gCGUCGGUGuCCUUgGgGUCGCcGUg -3'
miRNA:   3'- aGCAGUCGCuGGAGgUgCAGCGaCAg -5'
18987 3' -56.7 NC_004684.1 + 2154 0.68 0.593434
Target:  5'- gCGUCGGUGAaCUCgGCGUUGacgGUCa -3'
miRNA:   3'- aGCAGUCGCUgGAGgUGCAGCga-CAG- -5'
18987 3' -56.7 NC_004684.1 + 3440 0.69 0.499645
Target:  5'- -aGUCAGCGGCa-CCACGguguUCGCcGUCu -3'
miRNA:   3'- agCAGUCGCUGgaGGUGC----AGCGaCAG- -5'
18987 3' -56.7 NC_004684.1 + 3695 0.7 0.454251
Target:  5'- cUCGuguUCGGCGGCCcagugcgcgacguacUCCACGUcccCGCUGUg -3'
miRNA:   3'- -AGC---AGUCGCUGG---------------AGGUGCA---GCGACAg -5'
18987 3' -56.7 NC_004684.1 + 4439 0.66 0.700122
Target:  5'- gUCGUCGGaGACCUCaGCgGUgGgUGUCa -3'
miRNA:   3'- -AGCAGUCgCUGGAGgUG-CAgCgACAG- -5'
18987 3' -56.7 NC_004684.1 + 7726 0.7 0.489599
Target:  5'- cCGUgAGCcACCUgaucgguaucgCCGCGcCGCUGUCg -3'
miRNA:   3'- aGCAgUCGcUGGA-----------GGUGCaGCGACAG- -5'
18987 3' -56.7 NC_004684.1 + 7865 1.11 0.000758
Target:  5'- aUCGUCAGCGACCUCCACGUCGCUGUCg -3'
miRNA:   3'- -AGCAGUCGCUGGAGGUGCAGCGACAG- -5'
18987 3' -56.7 NC_004684.1 + 7894 0.68 0.604108
Target:  5'- aCGUCAGCGugC-CCugGUgGCcGcCa -3'
miRNA:   3'- aGCAGUCGCugGaGGugCAgCGaCaG- -5'
18987 3' -56.7 NC_004684.1 + 8393 0.7 0.450409
Target:  5'- gCGUCAGCGccaACCacUCCGgcaccggguugcCGUUGCUGUCc -3'
miRNA:   3'- aGCAGUCGC---UGG--AGGU------------GCAGCGACAG- -5'
18987 3' -56.7 NC_004684.1 + 9508 0.67 0.636232
Target:  5'- cCGUCucGCGGCUgUCCAgGcuggccugaUCGCUGUCg -3'
miRNA:   3'- aGCAGu-CGCUGG-AGGUgC---------AGCGACAG- -5'
18987 3' -56.7 NC_004684.1 + 9976 0.69 0.540683
Target:  5'- cUCGUCGGCGGCCUgCuccugCGCggcGUCg -3'
miRNA:   3'- -AGCAGUCGCUGGAgGugca-GCGa--CAG- -5'
18987 3' -56.7 NC_004684.1 + 10214 0.68 0.582791
Target:  5'- -gGUCAGCGGCguucuccaggUCCACG-CGCUuGUCg -3'
miRNA:   3'- agCAGUCGCUGg---------AGGUGCaGCGA-CAG- -5'
18987 3' -56.7 NC_004684.1 + 10387 0.72 0.352388
Target:  5'- aUCGgugCgGGCGACCUCUggcgcgacaccgGCGUCGCUGg- -3'
miRNA:   3'- -AGCa--G-UCGCUGGAGG------------UGCAGCGACag -5'
18987 3' -56.7 NC_004684.1 + 10590 0.68 0.593434
Target:  5'- cCGUCGGCGGCC-CaguGCGUCgGCcggGUCu -3'
miRNA:   3'- aGCAGUCGCUGGaGg--UGCAG-CGa--CAG- -5'
18987 3' -56.7 NC_004684.1 + 13142 0.7 0.489599
Target:  5'- aCG-CAGCG-CCU-CGCGUCGCUGa- -3'
miRNA:   3'- aGCaGUCGCuGGAgGUGCAGCGACag -5'
18987 3' -56.7 NC_004684.1 + 14520 0.67 0.668323
Target:  5'- aUCGUCuucGGCGACgUaccggUCACGUCGaaGUCg -3'
miRNA:   3'- -AGCAG---UCGCUGgA-----GGUGCAGCgaCAG- -5'
18987 3' -56.7 NC_004684.1 + 18448 0.66 0.689571
Target:  5'- aUGUCgAGCGGCa-CCGCGcCGCcgGUCg -3'
miRNA:   3'- aGCAG-UCGCUGgaGGUGCaGCGa-CAG- -5'
18987 3' -56.7 NC_004684.1 + 18889 0.69 0.509783
Target:  5'- ---cCAGCGcggcuCCUCCACGUCgGCgggGUCg -3'
miRNA:   3'- agcaGUCGCu----GGAGGUGCAG-CGa--CAG- -5'
18987 3' -56.7 NC_004684.1 + 20661 0.7 0.446585
Target:  5'- uUCGaCGGUGACCUCCACGgugccuccuauaGCUGg- -3'
miRNA:   3'- -AGCaGUCGCUGGAGGUGCag----------CGACag -5'
18987 3' -56.7 NC_004684.1 + 21549 0.68 0.604108
Target:  5'- cUCGUCGGUGGucgggguguCCUCUcCGUCGUcGUCc -3'
miRNA:   3'- -AGCAGUCGCU---------GGAGGuGCAGCGaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.