Results 1 - 20 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 65975 | 0.73 | 0.313105 |
Target: 5'- cUUGgccCGGCaGGCCUCCAgGUCGCUGg- -3' miRNA: 3'- -AGCa--GUCG-CUGGAGGUgCAGCGACag -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 65078 | 0.67 | 0.646945 |
Target: 5'- cCGcUGGCGAgCCgcagacCCGCGUCGCgGUCa -3' miRNA: 3'- aGCaGUCGCU-GGa-----GGUGCAGCGaCAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 64785 | 0.66 | 0.678968 |
Target: 5'- cUGUCGGCGAagCUgaCCACGccguuggUGCUGUCg -3' miRNA: 3'- aGCAGUCGCUg-GA--GGUGCa------GCGACAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 63034 | 0.7 | 0.450409 |
Target: 5'- aUCGUCGGCGcGCg-CCGCG-CGCUgGUCg -3' miRNA: 3'- -AGCAGUCGC-UGgaGGUGCaGCGA-CAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 61614 | 0.66 | 0.678968 |
Target: 5'- aCGcCAGCG-CCUgCACGUCacuGCUGg- -3' miRNA: 3'- aGCaGUCGCuGGAgGUGCAG---CGACag -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 59922 | 0.66 | 0.700122 |
Target: 5'- cUUGUCAGCGucgguguccgGCC-CCACGUgcgCGUUGUg -3' miRNA: 3'- -AGCAGUCGC----------UGGaGGUGCA---GCGACAg -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 59817 | 0.67 | 0.668323 |
Target: 5'- -gGUCGGCGGCCU--ACGUCGUggaUCg -3' miRNA: 3'- agCAGUCGCUGGAggUGCAGCGac-AG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 56732 | 0.68 | 0.551126 |
Target: 5'- -gGUCAGggaCGACUUCgGCGUCgacggguuGCUGUCg -3' miRNA: 3'- agCAGUC---GCUGGAGgUGCAG--------CGACAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 51749 | 0.68 | 0.582791 |
Target: 5'- aUG-CGGCGugCUCCAgG-CGCUuGUCg -3' miRNA: 3'- aGCaGUCGCugGAGGUgCaGCGA-CAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 48291 | 0.7 | 0.479647 |
Target: 5'- aCGUCccacCGGCCUUCGCGcaccagcaguUCGCUGUCc -3' miRNA: 3'- aGCAGuc--GCUGGAGGUGC----------AGCGACAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 45959 | 0.7 | 0.454251 |
Target: 5'- cUCGaCGGCGGCCUCCAugaccucggccaguuCGUCGUUuuugaaGUCa -3' miRNA: 3'- -AGCaGUCGCUGGAGGU---------------GCAGCGA------CAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 43060 | 0.67 | 0.625515 |
Target: 5'- gCGggCGGCGACCacgUCCuCGUCGgUGUa -3' miRNA: 3'- aGCa-GUCGCUGG---AGGuGCAGCgACAg -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 42079 | 0.66 | 0.725169 |
Target: 5'- gUCGcCAGCGGCCaCCGCGcgggcauagaacgccUUGCgGUCc -3' miRNA: 3'- -AGCaGUCGCUGGaGGUGC---------------AGCGaCAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 40579 | 0.66 | 0.689571 |
Target: 5'- --cUCGGUGAUCUCCGgGUCGgUGg- -3' miRNA: 3'- agcAGUCGCUGGAGGUgCAGCgACag -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 40534 | 0.68 | 0.582791 |
Target: 5'- gUCGgcggUGGCGACCUCCGCGaccuccaggaGCUGg- -3' miRNA: 3'- -AGCa---GUCGCUGGAGGUGCag--------CGACag -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 39905 | 0.67 | 0.646945 |
Target: 5'- -aGUCGGCGGgUUCUuuGUCGUUGUg -3' miRNA: 3'- agCAGUCGCUgGAGGugCAGCGACAg -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 39687 | 0.68 | 0.572187 |
Target: 5'- gCGcUCGGCcgccgagauGACCgagUCCACcUCGCUGUCg -3' miRNA: 3'- aGC-AGUCG---------CUGG---AGGUGcAGCGACAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 39017 | 0.71 | 0.403959 |
Target: 5'- gCGUCGGUaucGACCUCUACGgcucggCGgUGUCc -3' miRNA: 3'- aGCAGUCG---CUGGAGGUGCa-----GCgACAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 37571 | 0.68 | 0.604108 |
Target: 5'- gUCGUaCAcgaGGCCUCCuauACGgCGCUGUCg -3' miRNA: 3'- -AGCA-GUcg-CUGGAGG---UGCaGCGACAG- -5' |
|||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 34970 | 0.73 | 0.313105 |
Target: 5'- gUCGUUGGCcaaGGCCUUCACGUCGCg--- -3' miRNA: 3'- -AGCAGUCG---CUGGAGGUGCAGCGacag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home