Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18987 | 3' | -56.7 | NC_004684.1 | + | 18448 | 0.66 | 0.689571 |
Target: 5'- aUGUCgAGCGGCa-CCGCGcCGCcgGUCg -3' miRNA: 3'- aGCAG-UCGCUGgaGGUGCaGCGa-CAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 59922 | 0.66 | 0.700122 |
Target: 5'- cUUGUCAGCGucgguguccgGCC-CCACGUgcgCGUUGUg -3' miRNA: 3'- -AGCAGUCGC----------UGGaGGUGCA---GCGACAg -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 4439 | 0.66 | 0.700122 |
Target: 5'- gUCGUCGGaGACCUCaGCgGUgGgUGUCa -3' miRNA: 3'- -AGCAGUCgCUGGAGgUG-CAgCgACAG- -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 734 | 0.66 | 0.721026 |
Target: 5'- gCGUCGGUGuCCUUgGgGUCGCcGUg -3' miRNA: 3'- aGCAGUCGCuGGAGgUgCAGCGaCAg -5' |
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18987 | 3' | -56.7 | NC_004684.1 | + | 42079 | 0.66 | 0.725169 |
Target: 5'- gUCGcCAGCGGCCaCCGCGcgggcauagaacgccUUGCgGUCc -3' miRNA: 3'- -AGCaGUCGCUGGaGGUGC---------------AGCGaCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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