miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 5' -58.1 NC_004684.1 + 15076 0.67 0.5598
Target:  5'- uCGACGGCcuuaucGGCGCGGUGGccgcccuggagGCCGAc- -3'
miRNA:   3'- uGCUGUCG------CCGCGCCGCUa----------UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 32423 0.67 0.5598
Target:  5'- aGCGGCAccucgGGCGUGGCGAUGCaccuCGAcUCg -3'
miRNA:   3'- -UGCUGUcg---CCGCGCCGCUAUG----GCU-AG- -5'
18987 5' -58.1 NC_004684.1 + 56091 0.67 0.5598
Target:  5'- uGCGGCAuGCuGGCgGUGGCGGUgGCaCGGUUg -3'
miRNA:   3'- -UGCUGU-CG-CCG-CGCCGCUA-UG-GCUAG- -5'
18987 5' -58.1 NC_004684.1 + 34076 0.67 0.5598
Target:  5'- gGCGACccUGGCGCGGCGG-GCgCGAa- -3'
miRNA:   3'- -UGCUGucGCCGCGCCGCUaUG-GCUag -5'
18987 5' -58.1 NC_004684.1 + 21239 0.67 0.549379
Target:  5'- uGCGGCGuauuucGCGuGCGCGGUGAcaccGCCGGa- -3'
miRNA:   3'- -UGCUGU------CGC-CGCGCCGCUa---UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 57205 0.67 0.549379
Target:  5'- -aGGCGGCGGCGCGaUGGUgcucagccuGCCGGa- -3'
miRNA:   3'- ugCUGUCGCCGCGCcGCUA---------UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 40696 0.67 0.549379
Target:  5'- gACGAacuuCAGCuGgGCGGCGGUgGCCGGg- -3'
miRNA:   3'- -UGCU----GUCGcCgCGCCGCUA-UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 27454 0.67 0.549379
Target:  5'- cGCGAUGGUGGCcuugggcaucauGCcggugcccacGGCGAUACCGccGUCg -3'
miRNA:   3'- -UGCUGUCGCCG------------CG----------CCGCUAUGGC--UAG- -5'
18987 5' -58.1 NC_004684.1 + 26828 0.67 0.549379
Target:  5'- aACGACAccaGC-GCGCuGGUGG-ACCGGUCg -3'
miRNA:   3'- -UGCUGU---CGcCGCG-CCGCUaUGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 24519 0.67 0.54834
Target:  5'- cGCGuuCGGCGGUGCcaucuacGGCGGUguGCCGGg- -3'
miRNA:   3'- -UGCu-GUCGCCGCG-------CCGCUA--UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 49713 0.67 0.543156
Target:  5'- cGCGcuCGGCGGCGCGGCGuucaaacucagcgGCaCGcUCg -3'
miRNA:   3'- -UGCu-GUCGCCGCGCCGCua-----------UG-GCuAG- -5'
18987 5' -58.1 NC_004684.1 + 48950 0.67 0.539019
Target:  5'- aACGGCAcGuCGGCG-GGCGGggugGCCGGg- -3'
miRNA:   3'- -UGCUGU-C-GCCGCgCCGCUa---UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 26414 0.67 0.539019
Target:  5'- cGCGucggcaauCGGCGGCcCGGCGGccugGCCGAg- -3'
miRNA:   3'- -UGCu-------GUCGCCGcGCCGCUa---UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 10248 0.67 0.539019
Target:  5'- aGCG-CGGUGGCcaGCGGCGGcugGCUGAg- -3'
miRNA:   3'- -UGCuGUCGCCG--CGCCGCUa--UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 51565 0.67 0.539019
Target:  5'- uGCGcCAGUGcgcgcuGCGCGGCGGcgACCGGg- -3'
miRNA:   3'- -UGCuGUCGC------CGCGCCGCUa-UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 18014 0.67 0.539019
Target:  5'- gGCGACuaCGGCGUGGCGuUGgaGGUCu -3'
miRNA:   3'- -UGCUGucGCCGCGCCGCuAUggCUAG- -5'
18987 5' -58.1 NC_004684.1 + 47539 0.67 0.528727
Target:  5'- aGCGACuaccucagcgAGCGcGCGaccaGGUGGUGCCGGa- -3'
miRNA:   3'- -UGCUG----------UCGC-CGCg---CCGCUAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 29349 0.67 0.528727
Target:  5'- cUGuCGGCGGUcgGCGGUGAUGCCu--- -3'
miRNA:   3'- uGCuGUCGCCG--CGCCGCUAUGGcuag -5'
18987 5' -58.1 NC_004684.1 + 24586 0.67 0.528727
Target:  5'- cGCGGCccuGCGGCaccgcccCGGCGGUagcgcGCUGAUCu -3'
miRNA:   3'- -UGCUGu--CGCCGc------GCCGCUA-----UGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 20980 0.67 0.528727
Target:  5'- --aGCGGCGGCGCaGGuCGGc-CCGAUCc -3'
miRNA:   3'- ugcUGUCGCCGCG-CC-GCUauGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.