miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 5' -58.1 NC_004684.1 + 37705 0.66 0.601952
Target:  5'- cCGACGGCGuucggcauGgGCGGCcgggcccgcacGGUACCGAUg -3'
miRNA:   3'- uGCUGUCGC--------CgCGCCG-----------CUAUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 39055 0.66 0.601952
Target:  5'- cGCGaACAccuCGGUGCGGUgcuuGGUGCCGGUg -3'
miRNA:   3'- -UGC-UGUc--GCCGCGCCG----CUAUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 56108 0.66 0.601952
Target:  5'- gUGGcCAGCaGCGUGGUGGUGCgCGAc- -3'
miRNA:   3'- uGCU-GUCGcCGCGCCGCUAUG-GCUag -5'
18987 5' -58.1 NC_004684.1 + 59012 0.66 0.601952
Target:  5'- uGCGcCAGUuccuGGCGUuugaGGuCGAUGCCGAUg -3'
miRNA:   3'- -UGCuGUCG----CCGCG----CC-GCUAUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 42605 0.66 0.601952
Target:  5'- cACGGCGGUGaGCGCGccguugaucGCGuugGCCuGGUCg -3'
miRNA:   3'- -UGCUGUCGC-CGCGC---------CGCua-UGG-CUAG- -5'
18987 5' -58.1 NC_004684.1 + 26585 0.66 0.601952
Target:  5'- cGCGGCGGUGuGCGCGGguuCGccACCGGc- -3'
miRNA:   3'- -UGCUGUCGC-CGCGCC---GCuaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 58331 0.66 0.591358
Target:  5'- gGCG-CGGCaGGUGCGGCaacuGAccuUGCCGGUg -3'
miRNA:   3'- -UGCuGUCG-CCGCGCCG----CU---AUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 21938 0.66 0.591358
Target:  5'- uGCGGCcuuGCGG-GCGGCcaugGAUGCCcggcuGAUCg -3'
miRNA:   3'- -UGCUGu--CGCCgCGCCG----CUAUGG-----CUAG- -5'
18987 5' -58.1 NC_004684.1 + 12019 0.66 0.591358
Target:  5'- cGCGGCGGCGGUGgccaaGGCcAUGCuCGAc- -3'
miRNA:   3'- -UGCUGUCGCCGCg----CCGcUAUG-GCUag -5'
18987 5' -58.1 NC_004684.1 + 41215 0.66 0.591358
Target:  5'- gACGcCAGCGGUGCG-CGAgcUGCUGGc- -3'
miRNA:   3'- -UGCuGUCGCCGCGCcGCU--AUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 14767 0.66 0.591358
Target:  5'- cUGAuCAGCGGCGUGGaCG-UACUGGc- -3'
miRNA:   3'- uGCU-GUCGCCGCGCC-GCuAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 24032 0.67 0.580796
Target:  5'- cCGGCAaggugccCGGCGCGGUGAUcaaccccgacgGCaCGGUCa -3'
miRNA:   3'- uGCUGUc------GCCGCGCCGCUA-----------UG-GCUAG- -5'
18987 5' -58.1 NC_004684.1 + 38810 0.67 0.580796
Target:  5'- --aGCGGCGGUGCccgccuGGCGGUGCCcGAc- -3'
miRNA:   3'- ugcUGUCGCCGCG------CCGCUAUGG-CUag -5'
18987 5' -58.1 NC_004684.1 + 4832 0.67 0.580796
Target:  5'- cGCGGCAcuuGCGGCuGUGGCcGUGCgCGAg- -3'
miRNA:   3'- -UGCUGU---CGCCG-CGCCGcUAUG-GCUag -5'
18987 5' -58.1 NC_004684.1 + 18400 0.67 0.580796
Target:  5'- cACGACcuacuacuucGGCGGCcCGGCGGgcgcACCGGc- -3'
miRNA:   3'- -UGCUG----------UCGCCGcGCCGCUa---UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 42491 0.67 0.570274
Target:  5'- cGCGuCGGCgcguuGGgGuCGGCGggGCCGAUUg -3'
miRNA:   3'- -UGCuGUCG-----CCgC-GCCGCuaUGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 10137 0.67 0.570274
Target:  5'- aACcACGGCucacGCGUGGCGAUGaugcgcucCCGGUCg -3'
miRNA:   3'- -UGcUGUCGc---CGCGCCGCUAU--------GGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 13193 0.67 0.570274
Target:  5'- cUGGcCGGUGGgGCGGCGugcACCGcgCg -3'
miRNA:   3'- uGCU-GUCGCCgCGCCGCua-UGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 34827 0.67 0.567127
Target:  5'- gACGACGGCGGUcugcugcgcaugcaGCcgugGGCGGUuCCGcgCg -3'
miRNA:   3'- -UGCUGUCGCCG--------------CG----CCGCUAuGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 44268 0.67 0.563983
Target:  5'- uCGACGGCGGCacaccacucgugcaCGGCGucGCCGAacUCg -3'
miRNA:   3'- uGCUGUCGCCGc-------------GCCGCuaUGGCU--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.