miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 5' -58.1 NC_004684.1 + 12958 0.74 0.239156
Target:  5'- cCGGCGGCGGCcuCGGCGGUGgCGGccUCg -3'
miRNA:   3'- uGCUGUCGCCGc-GCCGCUAUgGCU--AG- -5'
18987 5' -58.1 NC_004684.1 + 52810 0.73 0.263592
Target:  5'- -gGACAGCGccuacgaGCGUGGCGAgGCCGAc- -3'
miRNA:   3'- ugCUGUCGC-------CGCGCCGCUaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 27790 0.73 0.264244
Target:  5'- cCGACGGU-GCGCGGCGGU-UCGGUCc -3'
miRNA:   3'- uGCUGUCGcCGCGCCGCUAuGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 63583 0.73 0.270841
Target:  5'- uCGGCcugcGCGGCGCGGCGGUgguuACCGccUCg -3'
miRNA:   3'- uGCUGu---CGCCGCGCCGCUA----UGGCu-AG- -5'
18987 5' -58.1 NC_004684.1 + 7381 0.73 0.270841
Target:  5'- cGCGugGuGCaGUGCGGCGAUgaACUGGUCu -3'
miRNA:   3'- -UGCugU-CGcCGCGCCGCUA--UGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 22172 0.72 0.284431
Target:  5'- uCGuuGGCGGCGCGuGCGGUGucCCGGUa -3'
miRNA:   3'- uGCugUCGCCGCGC-CGCUAU--GGCUAg -5'
18987 5' -58.1 NC_004684.1 + 31815 0.72 0.284431
Target:  5'- uCGGCGGCGGUGUgucgccaccGGCGAUgaACCGggCg -3'
miRNA:   3'- uGCUGUCGCCGCG---------CCGCUA--UGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 15765 0.72 0.284431
Target:  5'- uGCG-CAGCGGCaccuaucgcgGCGGCGAcACCGGc- -3'
miRNA:   3'- -UGCuGUCGCCG----------CGCCGCUaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 40382 0.72 0.291425
Target:  5'- uCGGCGGUGGCGgccuuCGGCag-GCCGGUCa -3'
miRNA:   3'- uGCUGUCGCCGC-----GCCGcuaUGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 46593 0.72 0.291425
Target:  5'- uCGACGGCGGCGaCGGCGG---CGGUUu -3'
miRNA:   3'- uGCUGUCGCCGC-GCCGCUaugGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 25651 0.72 0.291425
Target:  5'- uCGAgAGCGGC--GGCGGUACCGggCa -3'
miRNA:   3'- uGCUgUCGCCGcgCCGCUAUGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 51589 0.72 0.291425
Target:  5'- -aGGCGGCGGUGaccgGGCGGUGCC-AUCc -3'
miRNA:   3'- ugCUGUCGCCGCg---CCGCUAUGGcUAG- -5'
18987 5' -58.1 NC_004684.1 + 49538 0.72 0.298554
Target:  5'- cCGGCGGUGuGCGCGGUG--GCCGAcuUCg -3'
miRNA:   3'- uGCUGUCGC-CGCGCCGCuaUGGCU--AG- -5'
18987 5' -58.1 NC_004684.1 + 18353 0.72 0.298554
Target:  5'- cCGAcCGGCGGCGCGGU---GCCGcUCg -3'
miRNA:   3'- uGCU-GUCGCCGCGCCGcuaUGGCuAG- -5'
18987 5' -58.1 NC_004684.1 + 40738 0.72 0.305817
Target:  5'- gGCGGgGGCGGUgGCGGUGGUGuuGAa- -3'
miRNA:   3'- -UGCUgUCGCCG-CGCCGCUAUggCUag -5'
18987 5' -58.1 NC_004684.1 + 30431 0.72 0.305817
Target:  5'- uCGACGGCGGCGUGGaGcUGCUGAc- -3'
miRNA:   3'- uGCUGUCGCCGCGCCgCuAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 1381 0.72 0.312469
Target:  5'- -gGACAGCuccggguGGgGCGGCGGcUACCGGUa -3'
miRNA:   3'- ugCUGUCG-------CCgCGCCGCU-AUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 66308 0.72 0.313215
Target:  5'- gACGGCAGCGGCGCGuaG-UAgCGcUCg -3'
miRNA:   3'- -UGCUGUCGCCGCGCcgCuAUgGCuAG- -5'
18987 5' -58.1 NC_004684.1 + 43477 0.71 0.320747
Target:  5'- gGCGGCAGCaGGUGCGGCGGgcgcAgCGGc- -3'
miRNA:   3'- -UGCUGUCG-CCGCGCCGCUa---UgGCUag -5'
18987 5' -58.1 NC_004684.1 + 56177 0.71 0.336216
Target:  5'- gACGACGGCGGCGCuauCGAgcgcCCGGUg -3'
miRNA:   3'- -UGCUGUCGCCGCGcc-GCUau--GGCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.