miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 5' -58.1 NC_004684.1 + 8546 0.66 0.623204
Target:  5'- uCGGCAaCGGCGUGGUGuucGUGCCGc-- -3'
miRNA:   3'- uGCUGUcGCCGCGCCGC---UAUGGCuag -5'
18987 5' -58.1 NC_004684.1 + 19685 0.66 0.644485
Target:  5'- gGCG-CGGCGGCaaGGCcugGCCGAg- -3'
miRNA:   3'- -UGCuGUCGCCGcgCCGcuaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 14767 0.66 0.591358
Target:  5'- cUGAuCAGCGGCGUGGaCG-UACUGGc- -3'
miRNA:   3'- uGCU-GUCGCCGCGCC-GCuAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 18562 0.66 0.633845
Target:  5'- cGCGACGGCGGCcgaGGUcaagACCGcgCu -3'
miRNA:   3'- -UGCUGUCGCCGcg-CCGcua-UGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 41215 0.66 0.591358
Target:  5'- gACGcCAGCGGUGCG-CGAgcUGCUGGc- -3'
miRNA:   3'- -UGCuGUCGCCGCGCcGCU--AUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 21318 0.66 0.623204
Target:  5'- -aGGCGGUGGUcCGGCGcgACCGccgcAUCc -3'
miRNA:   3'- ugCUGUCGCCGcGCCGCuaUGGC----UAG- -5'
18987 5' -58.1 NC_004684.1 + 46553 0.66 0.623204
Target:  5'- aACGACGcCGGUGCGcuUGGUGCCGGa- -3'
miRNA:   3'- -UGCUGUcGCCGCGCc-GCUAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 64495 0.66 0.638102
Target:  5'- gACGGCGGgGGCGCaccuucgucaccauGCuGAUGCCGGa- -3'
miRNA:   3'- -UGCUGUCgCCGCGc-------------CG-CUAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 11961 0.66 0.644485
Target:  5'- cUGGCAccuGCGGCGCcaccgcgaccGGCGGcACCGAc- -3'
miRNA:   3'- uGCUGU---CGCCGCG----------CCGCUaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 23469 0.66 0.644485
Target:  5'- cCGACAGCGuGacgGCGGUGGUgACCGcuuUCc -3'
miRNA:   3'- uGCUGUCGC-Cg--CGCCGCUA-UGGCu--AG- -5'
18987 5' -58.1 NC_004684.1 + 21938 0.66 0.591358
Target:  5'- uGCGGCcuuGCGG-GCGGCcaugGAUGCCcggcuGAUCg -3'
miRNA:   3'- -UGCUGu--CGCCgCGCCG----CUAUGG-----CUAG- -5'
18987 5' -58.1 NC_004684.1 + 15076 0.67 0.5598
Target:  5'- uCGACGGCcuuaucGGCGCGGUGGccgcccuggagGCCGAc- -3'
miRNA:   3'- uGCUGUCG------CCGCGCCGCUa----------UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 49713 0.67 0.543156
Target:  5'- cGCGcuCGGCGGCGCGGCGuucaaacucagcgGCaCGcUCg -3'
miRNA:   3'- -UGCu-GUCGCCGCGCCGCua-----------UG-GCuAG- -5'
18987 5' -58.1 NC_004684.1 + 29349 0.67 0.528727
Target:  5'- cUGuCGGCGGUcgGCGGUGAUGCCu--- -3'
miRNA:   3'- uGCuGUCGCCG--CGCCGCUAUGGcuag -5'
18987 5' -58.1 NC_004684.1 + 51565 0.67 0.539019
Target:  5'- uGCGcCAGUGcgcgcuGCGCGGCGGcgACCGGg- -3'
miRNA:   3'- -UGCuGUCGC------CGCGCCGCUa-UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 18014 0.67 0.539019
Target:  5'- gGCGACuaCGGCGUGGCGuUGgaGGUCu -3'
miRNA:   3'- -UGCUGucGCCGCGCCGCuAUggCUAG- -5'
18987 5' -58.1 NC_004684.1 + 57205 0.67 0.549379
Target:  5'- -aGGCGGCGGCGCGaUGGUgcucagccuGCCGGa- -3'
miRNA:   3'- ugCUGUCGCCGCGCcGCUA---------UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 40696 0.67 0.549379
Target:  5'- gACGAacuuCAGCuGgGCGGCGGUgGCCGGg- -3'
miRNA:   3'- -UGCU----GUCGcCgCGCCGCUA-UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 24586 0.67 0.528727
Target:  5'- cGCGGCccuGCGGCaccgcccCGGCGGUagcgcGCUGAUCu -3'
miRNA:   3'- -UGCUGu--CGCCGc------GCCGCUA-----UGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 26828 0.67 0.549379
Target:  5'- aACGACAccaGC-GCGCuGGUGG-ACCGGUCg -3'
miRNA:   3'- -UGCUGU---CGcCGCG-CCGCUaUGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.