miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 5' -58.1 NC_004684.1 + 11747 0.69 0.459039
Target:  5'- cACGuuGGCcgccgugcuGGCGUGGcCGAUGCCGAcggUCa -3'
miRNA:   3'- -UGCugUCG---------CCGCGCC-GCUAUGGCU---AG- -5'
18987 5' -58.1 NC_004684.1 + 11865 0.69 0.449479
Target:  5'- uACGAacucguGGCGGCGCuGGCGGUgaacacACCGGg- -3'
miRNA:   3'- -UGCUg-----UCGCCGCG-CCGCUA------UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 11903 0.67 0.525653
Target:  5'- -gGACAGCGGCGCGcucGCGcccuucuccacggugGCCuGGUCg -3'
miRNA:   3'- ugCUGUCGCCGCGC---CGCua-------------UGG-CUAG- -5'
18987 5' -58.1 NC_004684.1 + 11961 0.66 0.644485
Target:  5'- cUGGCAccuGCGGCGCcaccgcgaccGGCGGcACCGAc- -3'
miRNA:   3'- uGCUGU---CGCCGCG----------CCGCUaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 12007 0.68 0.488349
Target:  5'- -gGACGGCccuGGCuGuCGGUGGUGCCGcgCa -3'
miRNA:   3'- ugCUGUCG---CCG-C-GCCGCUAUGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 12019 0.66 0.591358
Target:  5'- cGCGGCGGCGGUGgccaaGGCcAUGCuCGAc- -3'
miRNA:   3'- -UGCUGUCGCCGCg----CCGcUAUG-GCUag -5'
18987 5' -58.1 NC_004684.1 + 12375 0.69 0.467736
Target:  5'- cCGGgGGCGGUGUugugucugcgcucGGUGGUGCaCGGUCg -3'
miRNA:   3'- uGCUgUCGCCGCG-------------CCGCUAUG-GCUAG- -5'
18987 5' -58.1 NC_004684.1 + 12958 0.74 0.239156
Target:  5'- cCGGCGGCGGCcuCGGCGGUGgCGGccUCg -3'
miRNA:   3'- uGCUGUCGCCGc-GCCGCUAUgGCU--AG- -5'
18987 5' -58.1 NC_004684.1 + 13018 0.68 0.508369
Target:  5'- cCGACGGCGGCGaaguuggccgaCGGCGc-ACCGGc- -3'
miRNA:   3'- uGCUGUCGCCGC-----------GCCGCuaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 13193 0.67 0.570274
Target:  5'- cUGGcCGGUGGgGCGGCGugcACCGcgCg -3'
miRNA:   3'- uGCU-GUCGCCgCGCCGCua-UGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 13896 0.7 0.377227
Target:  5'- uCGAUGGUGGCGUugcgGGCGAcACCGcgCu -3'
miRNA:   3'- uGCUGUCGCCGCG----CCGCUaUGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 13970 0.71 0.352222
Target:  5'- gACGGCAGUcGCGCGGCGcagGCCa--- -3'
miRNA:   3'- -UGCUGUCGcCGCGCCGCua-UGGcuag -5'
18987 5' -58.1 NC_004684.1 + 14767 0.66 0.591358
Target:  5'- cUGAuCAGCGGCGUGGaCG-UACUGGc- -3'
miRNA:   3'- uGCU-GUCGCCGCGCC-GCuAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 15076 0.67 0.5598
Target:  5'- uCGACGGCcuuaucGGCGCGGUGGccgcccuggagGCCGAc- -3'
miRNA:   3'- uGCUGUCG------CCGCGCCGCUa----------UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 15765 0.72 0.284431
Target:  5'- uGCG-CAGCGGCaccuaucgcgGCGGCGAcACCGGc- -3'
miRNA:   3'- -UGCuGUCGCCG----------CGCCGCUaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 15928 0.76 0.166651
Target:  5'- gGCGuGCGuCGGUGUGGCGAUGCCGcgCg -3'
miRNA:   3'- -UGC-UGUcGCCGCGCCGCUAUGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 17410 0.75 0.200063
Target:  5'- gACGAU-GCGGCGCGcGUGAacACCGGUCu -3'
miRNA:   3'- -UGCUGuCGCCGCGC-CGCUa-UGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 18014 0.67 0.539019
Target:  5'- gGCGACuaCGGCGUGGCGuUGgaGGUCu -3'
miRNA:   3'- -UGCUGucGCCGCGCCGCuAUggCUAG- -5'
18987 5' -58.1 NC_004684.1 + 18353 0.72 0.298554
Target:  5'- cCGAcCGGCGGCGCGGU---GCCGcUCg -3'
miRNA:   3'- uGCU-GUCGCCGCGCCGcuaUGGCuAG- -5'
18987 5' -58.1 NC_004684.1 + 18400 0.67 0.580796
Target:  5'- cACGACcuacuacuucGGCGGCcCGGCGGgcgcACCGGc- -3'
miRNA:   3'- -UGCUG----------UCGCCGcGCCGCUa---UGGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.