miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 5' -58.1 NC_004684.1 + 1381 0.72 0.312469
Target:  5'- -gGACAGCuccggguGGgGCGGCGGcUACCGGUa -3'
miRNA:   3'- ugCUGUCG-------CCgCGCCGCU-AUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 2112 0.68 0.488349
Target:  5'- uACGGC-GCGGCGUGGuCGGaGCUGGa- -3'
miRNA:   3'- -UGCUGuCGCCGCGCC-GCUaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 3787 0.71 0.336216
Target:  5'- aGCG-CGGCGGCGCuGGCGAUcuccuGCCa--- -3'
miRNA:   3'- -UGCuGUCGCCGCG-CCGCUA-----UGGcuag -5'
18987 5' -58.1 NC_004684.1 + 4041 0.66 0.644485
Target:  5'- gGCGACGGUGGCcuacCGGCcAUcGCCGGg- -3'
miRNA:   3'- -UGCUGUCGCCGc---GCCGcUA-UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 4184 0.74 0.21609
Target:  5'- uGCGccCGGCgGGCGCGGUGGUuCUGAUCa -3'
miRNA:   3'- -UGCu-GUCG-CCGCGCCGCUAuGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 4832 0.67 0.580796
Target:  5'- cGCGGCAcuuGCGGCuGUGGCcGUGCgCGAg- -3'
miRNA:   3'- -UGCUGU---CGCCG-CGCCGcUAUG-GCUag -5'
18987 5' -58.1 NC_004684.1 + 5878 0.68 0.497313
Target:  5'- -gGGCAGCaccagccugaccgGGUgGCGGCGGcGCUGAUCg -3'
miRNA:   3'- ugCUGUCG-------------CCG-CGCCGCUaUGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 6158 0.79 0.108417
Target:  5'- gACGGCGGCGGCcagcguGCGGCGGUaggcACCGggCa -3'
miRNA:   3'- -UGCUGUCGCCG------CGCCGCUA----UGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 6423 0.68 0.488349
Target:  5'- uCGGCGGCGGCGUGaacgccuucGCGcuugGCCGAg- -3'
miRNA:   3'- uGCUGUCGCCGCGC---------CGCua--UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 6890 0.66 0.645548
Target:  5'- gACGGCgucguAGUGGCcgucguccagugcacCGGCGAUGCCG-UCg -3'
miRNA:   3'- -UGCUG-----UCGCCGc--------------GCCGCUAUGGCuAG- -5'
18987 5' -58.1 NC_004684.1 + 7075 0.68 0.478479
Target:  5'- gAUGACAgcGCGGCauuGUGGCG-UACCGuUCg -3'
miRNA:   3'- -UGCUGU--CGCCG---CGCCGCuAUGGCuAG- -5'
18987 5' -58.1 NC_004684.1 + 7381 0.73 0.270841
Target:  5'- cGCGugGuGCaGUGCGGCGAUgaACUGGUCu -3'
miRNA:   3'- -UGCugU-CGcCGCGCCGCUA--UGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 7562 0.66 0.633845
Target:  5'- cCGGCcccgGGUGGCGCuGGUGcgGCUGGUg -3'
miRNA:   3'- uGCUG----UCGCCGCG-CCGCuaUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 7831 1.09 0.000647
Target:  5'- gACGACAGCGGCGCGGCGAUACCGAUCa -3'
miRNA:   3'- -UGCUGUCGCCGCGCCGCUAUGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 8546 0.66 0.623204
Target:  5'- uCGGCAaCGGCGUGGUGuucGUGCCGc-- -3'
miRNA:   3'- uGCUGUcGCCGCGCCGC---UAUGGCuag -5'
18987 5' -58.1 NC_004684.1 + 8727 0.78 0.124199
Target:  5'- uACGGCGGgGGUGCcgaggaucGGCGGUGCCGGUg -3'
miRNA:   3'- -UGCUGUCgCCGCG--------CCGCUAUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 10137 0.67 0.570274
Target:  5'- aACcACGGCucacGCGUGGCGAUGaugcgcucCCGGUCg -3'
miRNA:   3'- -UGcUGUCGc---CGCGCCGCUAU--------GGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 10248 0.67 0.539019
Target:  5'- aGCG-CGGUGGCcaGCGGCGGcugGCUGAg- -3'
miRNA:   3'- -UGCuGUCGCCG--CGCCGCUa--UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 10471 0.68 0.508369
Target:  5'- gGCGGCcugguacccGGCGGUGCGcGCGAUcUCGcgCa -3'
miRNA:   3'- -UGCUG---------UCGCCGCGC-CGCUAuGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 11392 0.74 0.227375
Target:  5'- -aGGCAGCGGUGgccaccaGcGUGGUGCCGAUCa -3'
miRNA:   3'- ugCUGUCGCCGCg------C-CGCUAUGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.