Results 1 - 20 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18987 | 5' | -58.1 | NC_004684.1 | + | 7831 | 1.09 | 0.000647 |
Target: 5'- gACGACAGCGGCGCGGCGAUACCGAUCa -3' miRNA: 3'- -UGCUGUCGCCGCGCCGCUAUGGCUAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 49183 | 0.85 | 0.036456 |
Target: 5'- gGCGGCGGCGGCgGCGGCGGccUGCuCGGUCg -3' miRNA: 3'- -UGCUGUCGCCG-CGCCGCU--AUG-GCUAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 41430 | 0.84 | 0.043215 |
Target: 5'- gUGGCGGUGGUGCGGCGGUGCCGccgguGUCa -3' miRNA: 3'- uGCUGUCGCCGCGCCGCUAUGGC-----UAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 22278 | 0.81 | 0.07348 |
Target: 5'- cUGGCGGCGGCcaaggcccgcgcgGCGGCGGUGCCGAa- -3' miRNA: 3'- uGCUGUCGCCG-------------CGCCGCUAUGGCUag -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 6158 | 0.79 | 0.108417 |
Target: 5'- gACGGCGGCGGCcagcguGCGGCGGUaggcACCGggCa -3' miRNA: 3'- -UGCUGUCGCCG------CGCCGCUA----UGGCuaG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 42708 | 0.78 | 0.120881 |
Target: 5'- cCGGCGGCGGCGgGGgaGGUGCCgGGUCg -3' miRNA: 3'- uGCUGUCGCCGCgCCg-CUAUGG-CUAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 8727 | 0.78 | 0.124199 |
Target: 5'- uACGGCGGgGGUGCcgaggaucGGCGGUGCCGGUg -3' miRNA: 3'- -UGCUGUCgCCGCG--------CCGCUAUGGCUAg -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 33874 | 0.77 | 0.142089 |
Target: 5'- uCGGCcuaccaGGCGGUGCgGGCGGUGCCGGUg -3' miRNA: 3'- uGCUG------UCGCCGCG-CCGCUAUGGCUAg -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 15928 | 0.76 | 0.166651 |
Target: 5'- gGCGuGCGuCGGUGUGGCGAUGCCGcgCg -3' miRNA: 3'- -UGC-UGUcGCCGCGCCGCUAUGGCuaG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 45211 | 0.76 | 0.171099 |
Target: 5'- aGCGGCAGCGcGUccauGCGGCGcuugGUGCUGGUCa -3' miRNA: 3'- -UGCUGUCGC-CG----CGCCGC----UAUGGCUAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 61402 | 0.75 | 0.180312 |
Target: 5'- -gGGCGGCGGCccgGCGGCGGUGCUGccggaaAUCg -3' miRNA: 3'- ugCUGUCGCCG---CGCCGCUAUGGC------UAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 17410 | 0.75 | 0.200063 |
Target: 5'- gACGAU-GCGGCGCGcGUGAacACCGGUCu -3' miRNA: 3'- -UGCUGuCGCCGCGC-CGCUa-UGGCUAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 22349 | 0.75 | 0.200063 |
Target: 5'- -aGGCGGUGGCgGCGGCGGcGgCGGUCg -3' miRNA: 3'- ugCUGUCGCCG-CGCCGCUaUgGCUAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 33706 | 0.75 | 0.205287 |
Target: 5'- uCGcCAGCGGCaGCGGCGGUGgcCCGAa- -3' miRNA: 3'- uGCuGUCGCCG-CGCCGCUAU--GGCUag -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 66658 | 0.74 | 0.210629 |
Target: 5'- uCGGCGGCGGCccggucacCGGCGGUGCCcaGGUCu -3' miRNA: 3'- uGCUGUCGCCGc-------GCCGCUAUGG--CUAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 60626 | 0.74 | 0.210629 |
Target: 5'- uCGACGGCaccgGGCGCGGCGAgaucaGCCugcGGUCg -3' miRNA: 3'- uGCUGUCG----CCGCGCCGCUa----UGG---CUAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 4184 | 0.74 | 0.21609 |
Target: 5'- uGCGccCGGCgGGCGCGGUGGUuCUGAUCa -3' miRNA: 3'- -UGCu-GUCG-CCGCGCCGCUAuGGCUAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 32604 | 0.74 | 0.227375 |
Target: 5'- gUGGCGGUGGCcCGGaCGGUGCCGAg- -3' miRNA: 3'- uGCUGUCGCCGcGCC-GCUAUGGCUag -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 11392 | 0.74 | 0.227375 |
Target: 5'- -aGGCAGCGGUGgccaccaGcGUGGUGCCGAUCa -3' miRNA: 3'- ugCUGUCGCCGCg------C-CGCUAUGGCUAG- -5' |
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18987 | 5' | -58.1 | NC_004684.1 | + | 26998 | 0.74 | 0.227375 |
Target: 5'- aGCG-CGGCGGgCGCGGCGAUcaacagccaggcACCGGg- -3' miRNA: 3'- -UGCuGUCGCC-GCGCCGCUA------------UGGCUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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