miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 5' -58.1 NC_004684.1 + 30431 0.72 0.305817
Target:  5'- uCGACGGCGGCGUGGaGcUGCUGAc- -3'
miRNA:   3'- uGCUGUCGCCGCGCCgCuAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 27790 0.73 0.264244
Target:  5'- cCGACGGU-GCGCGGCGGU-UCGGUCc -3'
miRNA:   3'- uGCUGUCGcCGCGCCGCUAuGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 63583 0.73 0.270841
Target:  5'- uCGGCcugcGCGGCGCGGCGGUgguuACCGccUCg -3'
miRNA:   3'- uGCUGu---CGCCGCGCCGCUA----UGGCu-AG- -5'
18987 5' -58.1 NC_004684.1 + 15765 0.72 0.284431
Target:  5'- uGCG-CAGCGGCaccuaucgcgGCGGCGAcACCGGc- -3'
miRNA:   3'- -UGCuGUCGCCG----------CGCCGCUaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 25651 0.72 0.291425
Target:  5'- uCGAgAGCGGC--GGCGGUACCGggCa -3'
miRNA:   3'- uGCUgUCGCCGcgCCGCUAUGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 40382 0.72 0.291425
Target:  5'- uCGGCGGUGGCGgccuuCGGCag-GCCGGUCa -3'
miRNA:   3'- uGCUGUCGCCGC-----GCCGcuaUGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 46593 0.72 0.291425
Target:  5'- uCGACGGCGGCGaCGGCGG---CGGUUu -3'
miRNA:   3'- uGCUGUCGCCGC-GCCGCUaugGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 18353 0.72 0.298554
Target:  5'- cCGAcCGGCGGCGCGGU---GCCGcUCg -3'
miRNA:   3'- uGCU-GUCGCCGCGCCGcuaUGGCuAG- -5'
18987 5' -58.1 NC_004684.1 + 49538 0.72 0.298554
Target:  5'- cCGGCGGUGuGCGCGGUG--GCCGAcuUCg -3'
miRNA:   3'- uGCUGUCGC-CGCGCCGCuaUGGCU--AG- -5'
18987 5' -58.1 NC_004684.1 + 26998 0.74 0.227375
Target:  5'- aGCG-CGGCGGgCGCGGCGAUcaacagccaggcACCGGg- -3'
miRNA:   3'- -UGCuGUCGCC-GCGCCGCUA------------UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 4184 0.74 0.21609
Target:  5'- uGCGccCGGCgGGCGCGGUGGUuCUGAUCa -3'
miRNA:   3'- -UGCu-GUCG-CCGCGCCGCUAuGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 66658 0.74 0.210629
Target:  5'- uCGGCGGCGGCccggucacCGGCGGUGCCcaGGUCu -3'
miRNA:   3'- uGCUGUCGCCGc-------GCCGCUAUGG--CUAG- -5'
18987 5' -58.1 NC_004684.1 + 41430 0.84 0.043215
Target:  5'- gUGGCGGUGGUGCGGCGGUGCCGccgguGUCa -3'
miRNA:   3'- uGCUGUCGCCGCGCCGCUAUGGC-----UAG- -5'
18987 5' -58.1 NC_004684.1 + 22278 0.81 0.07348
Target:  5'- cUGGCGGCGGCcaaggcccgcgcgGCGGCGGUGCCGAa- -3'
miRNA:   3'- uGCUGUCGCCG-------------CGCCGCUAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 6158 0.79 0.108417
Target:  5'- gACGGCGGCGGCcagcguGCGGCGGUaggcACCGggCa -3'
miRNA:   3'- -UGCUGUCGCCG------CGCCGCUA----UGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 33874 0.77 0.142089
Target:  5'- uCGGCcuaccaGGCGGUGCgGGCGGUGCCGGUg -3'
miRNA:   3'- uGCUG------UCGCCGCG-CCGCUAUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 45211 0.76 0.171099
Target:  5'- aGCGGCAGCGcGUccauGCGGCGcuugGUGCUGGUCa -3'
miRNA:   3'- -UGCUGUCGC-CG----CGCCGC----UAUGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 22349 0.75 0.200063
Target:  5'- -aGGCGGUGGCgGCGGCGGcGgCGGUCg -3'
miRNA:   3'- ugCUGUCGCCG-CGCCGCUaUgGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 17410 0.75 0.200063
Target:  5'- gACGAU-GCGGCGCGcGUGAacACCGGUCu -3'
miRNA:   3'- -UGCUGuCGCCGCGC-CGCUa-UGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 33706 0.75 0.205287
Target:  5'- uCGcCAGCGGCaGCGGCGGUGgcCCGAa- -3'
miRNA:   3'- uGCuGUCGCCG-CGCCGCUAU--GGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.