miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 5' -58.1 NC_004684.1 + 7831 1.09 0.000647
Target:  5'- gACGACAGCGGCGCGGCGAUACCGAUCa -3'
miRNA:   3'- -UGCUGUCGCCGCGCCGCUAUGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 13896 0.7 0.377227
Target:  5'- uCGAUGGUGGCGUugcgGGCGAcACCGcgCu -3'
miRNA:   3'- uGCUGUCGCCGCG----CCGCUaUGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 55632 0.69 0.449479
Target:  5'- gGCGGcCAGCGGCGCGaguucGUGGUuguCCGcUCa -3'
miRNA:   3'- -UGCU-GUCGCCGCGC-----CGCUAu--GGCuAG- -5'
18987 5' -58.1 NC_004684.1 + 6890 0.66 0.645548
Target:  5'- gACGGCgucguAGUGGCcgucguccagugcacCGGCGAUGCCG-UCg -3'
miRNA:   3'- -UGCUG-----UCGCCGc--------------GCCGCUAUGGCuAG- -5'
18987 5' -58.1 NC_004684.1 + 61402 0.75 0.180312
Target:  5'- -gGGCGGCGGCccgGCGGCGGUGCUGccggaaAUCg -3'
miRNA:   3'- ugCUGUCGCCG---CGCCGCUAUGGC------UAG- -5'
18987 5' -58.1 NC_004684.1 + 60626 0.74 0.210629
Target:  5'- uCGACGGCaccgGGCGCGGCGAgaucaGCCugcGGUCg -3'
miRNA:   3'- uGCUGUCG----CCGCGCCGCUa----UGG---CUAG- -5'
18987 5' -58.1 NC_004684.1 + 11392 0.74 0.227375
Target:  5'- -aGGCAGCGGUGgccaccaGcGUGGUGCCGAUCa -3'
miRNA:   3'- ugCUGUCGCCGCg------C-CGCUAUGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 12958 0.74 0.239156
Target:  5'- cCGGCGGCGGCcuCGGCGGUGgCGGccUCg -3'
miRNA:   3'- uGCUGUCGCCGc-GCCGCUAUgGCU--AG- -5'
18987 5' -58.1 NC_004684.1 + 31815 0.72 0.284431
Target:  5'- uCGGCGGCGGUGUgucgccaccGGCGAUgaACCGggCg -3'
miRNA:   3'- uGCUGUCGCCGCG---------CCGCUA--UGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 25469 0.7 0.377227
Target:  5'- uGCG-CGGCGGCGUaGGCGcugACCGGg- -3'
miRNA:   3'- -UGCuGUCGCCGCG-CCGCua-UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 51589 0.72 0.291425
Target:  5'- -aGGCGGCGGUGaccgGGCGGUGCC-AUCc -3'
miRNA:   3'- ugCUGUCGCCGCg---CCGCUAUGGcUAG- -5'
18987 5' -58.1 NC_004684.1 + 7381 0.73 0.270841
Target:  5'- cGCGugGuGCaGUGCGGCGAUgaACUGGUCu -3'
miRNA:   3'- -UGCugU-CGcCGCGCCGCUA--UGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 42708 0.78 0.120881
Target:  5'- cCGGCGGCGGCGgGGgaGGUGCCgGGUCg -3'
miRNA:   3'- uGCUGUCGCCGCgCCg-CUAUGG-CUAG- -5'
18987 5' -58.1 NC_004684.1 + 3787 0.71 0.336216
Target:  5'- aGCG-CGGCGGCGCuGGCGAUcuccuGCCa--- -3'
miRNA:   3'- -UGCuGUCGCCGCG-CCGCUA-----UGGcuag -5'
18987 5' -58.1 NC_004684.1 + 8727 0.78 0.124199
Target:  5'- uACGGCGGgGGUGCcgaggaucGGCGGUGCCGGUg -3'
miRNA:   3'- -UGCUGUCgCCGCG--------CCGCUAUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 52810 0.73 0.263592
Target:  5'- -gGACAGCGccuacgaGCGUGGCGAgGCCGAc- -3'
miRNA:   3'- ugCUGUCGC-------CGCGCCGCUaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 25614 0.71 0.355487
Target:  5'- cCGACc-CGGCGuCGGCGGUcgagaacagccgcucGCCGGUCg -3'
miRNA:   3'- uGCUGucGCCGC-GCCGCUA---------------UGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 59097 0.7 0.412376
Target:  5'- aACGcCAGgaacUGGCGCaguccGGCGAUGCCGAa- -3'
miRNA:   3'- -UGCuGUC----GCCGCG-----CCGCUAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 15928 0.76 0.166651
Target:  5'- gGCGuGCGuCGGUGUGGCGAUGCCGcgCg -3'
miRNA:   3'- -UGC-UGUcGCCGCGCCGCUAUGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 32604 0.74 0.227375
Target:  5'- gUGGCGGUGGCcCGGaCGGUGCCGAg- -3'
miRNA:   3'- uGCUGUCGCCGcGCC-GCUAUGGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.