miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 5' -58.1 NC_004684.1 + 6890 0.66 0.645548
Target:  5'- gACGGCgucguAGUGGCcgucguccagugcacCGGCGAUGCCG-UCg -3'
miRNA:   3'- -UGCUG-----UCGCCGc--------------GCCGCUAUGGCuAG- -5'
18987 5' -58.1 NC_004684.1 + 19685 0.66 0.644485
Target:  5'- gGCG-CGGCGGCaaGGCcugGCCGAg- -3'
miRNA:   3'- -UGCuGUCGCCGcgCCGcuaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 4041 0.66 0.644485
Target:  5'- gGCGACGGUGGCcuacCGGCcAUcGCCGGg- -3'
miRNA:   3'- -UGCUGUCGCCGc---GCCGcUA-UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 23469 0.66 0.644485
Target:  5'- cCGACAGCGuGacgGCGGUGGUgACCGcuuUCc -3'
miRNA:   3'- uGCUGUCGC-Cg--CGCCGCUA-UGGCu--AG- -5'
18987 5' -58.1 NC_004684.1 + 11961 0.66 0.644485
Target:  5'- cUGGCAccuGCGGCGCcaccgcgaccGGCGGcACCGAc- -3'
miRNA:   3'- uGCUGU---CGCCGCG----------CCGCUaUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 23095 0.66 0.644485
Target:  5'- cCGACGGCGGCcaguCGGCccagGCCguuGAUCa -3'
miRNA:   3'- uGCUGUCGCCGc---GCCGcua-UGG---CUAG- -5'
18987 5' -58.1 NC_004684.1 + 56034 0.66 0.644485
Target:  5'- cGCGGCGuCGGCGuCGGCcucgccCCGGUCc -3'
miRNA:   3'- -UGCUGUcGCCGC-GCCGcuau--GGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 64495 0.66 0.638102
Target:  5'- gACGGCGGgGGCGCaccuucgucaccauGCuGAUGCCGGa- -3'
miRNA:   3'- -UGCUGUCgCCGCGc-------------CG-CUAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 29411 0.66 0.633845
Target:  5'- uUGGuCAGCGGCGUGcGCGucUugCGGUa -3'
miRNA:   3'- uGCU-GUCGCCGCGC-CGCu-AugGCUAg -5'
18987 5' -58.1 NC_004684.1 + 18562 0.66 0.633845
Target:  5'- cGCGACGGCGGCcgaGGUcaagACCGcgCu -3'
miRNA:   3'- -UGCUGUCGCCGcg-CCGcua-UGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 7562 0.66 0.633845
Target:  5'- cCGGCcccgGGUGGCGCuGGUGcgGCUGGUg -3'
miRNA:   3'- uGCUG----UCGCCGCG-CCGCuaUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 31671 0.66 0.633845
Target:  5'- cUGuCGGCGGUGCgGGUGAaacaggaccgGCUGAUCa -3'
miRNA:   3'- uGCuGUCGCCGCG-CCGCUa---------UGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 23705 0.66 0.633845
Target:  5'- -gGACAGCGaucuuguugagcGCGCgGGUGAUACCa--- -3'
miRNA:   3'- ugCUGUCGC------------CGCG-CCGCUAUGGcuag -5'
18987 5' -58.1 NC_004684.1 + 8546 0.66 0.623204
Target:  5'- uCGGCAaCGGCGUGGUGuucGUGCCGc-- -3'
miRNA:   3'- uGCUGUcGCCGCGCCGC---UAUGGCuag -5'
18987 5' -58.1 NC_004684.1 + 49256 0.66 0.623204
Target:  5'- --cACAGCGGCGCguccauguuGGCGGUguccacACCGGccUCg -3'
miRNA:   3'- ugcUGUCGCCGCG---------CCGCUA------UGGCU--AG- -5'
18987 5' -58.1 NC_004684.1 + 46553 0.66 0.623204
Target:  5'- aACGACGcCGGUGCGcuUGGUGCCGGa- -3'
miRNA:   3'- -UGCUGUcGCCGCGCc-GCUAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 28065 0.66 0.623204
Target:  5'- uCGGCcccGGCGGUGUGGCcGGgccGCCGcgCg -3'
miRNA:   3'- uGCUG---UCGCCGCGCCG-CUa--UGGCuaG- -5'
18987 5' -58.1 NC_004684.1 + 21318 0.66 0.623204
Target:  5'- -aGGCGGUGGUcCGGCGcgACCGccgcAUCc -3'
miRNA:   3'- ugCUGUCGCCGcGCCGCuaUGGC----UAG- -5'
18987 5' -58.1 NC_004684.1 + 63810 0.66 0.61257
Target:  5'- cGCGACcGUGGUGCuGGUGAUgguGCgGAUg -3'
miRNA:   3'- -UGCUGuCGCCGCG-CCGCUA---UGgCUAg -5'
18987 5' -58.1 NC_004684.1 + 23054 0.66 0.611507
Target:  5'- gAUGGCGGCguuGGCGCgcuucuggccuucGGCGGUguuGCCGAa- -3'
miRNA:   3'- -UGCUGUCG---CCGCG-------------CCGCUA---UGGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.