miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18987 5' -58.1 NC_004684.1 + 66700 0.7 0.412376
Target:  5'- cCGGCGGCGGUcuugcgcugcGCGGCGAacUCGGUg -3'
miRNA:   3'- uGCUGUCGCCG----------CGCCGCUauGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 66658 0.74 0.210629
Target:  5'- uCGGCGGCGGCccggucacCGGCGGUGCCcaGGUCu -3'
miRNA:   3'- uGCUGUCGCCGc-------GCCGCUAUGG--CUAG- -5'
18987 5' -58.1 NC_004684.1 + 66308 0.72 0.313215
Target:  5'- gACGGCAGCGGCGCGuaG-UAgCGcUCg -3'
miRNA:   3'- -UGCUGUCGCCGCGCcgCuAUgGCuAG- -5'
18987 5' -58.1 NC_004684.1 + 64935 0.7 0.36876
Target:  5'- gGCGGCGGUGaGCGCcuggcgGGCGGUGgcCCGGUUc -3'
miRNA:   3'- -UGCUGUCGC-CGCG------CCGCUAU--GGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 64495 0.66 0.638102
Target:  5'- gACGGCGGgGGCGCaccuucgucaccauGCuGAUGCCGGa- -3'
miRNA:   3'- -UGCUGUCgCCGCGc-------------CG-CUAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 63810 0.66 0.61257
Target:  5'- cGCGACcGUGGUGCuGGUGAUgguGCgGAUg -3'
miRNA:   3'- -UGCUGuCGCCGCG-CCGCUA---UGgCUAg -5'
18987 5' -58.1 NC_004684.1 + 63583 0.73 0.270841
Target:  5'- uCGGCcugcGCGGCGCGGCGGUgguuACCGccUCg -3'
miRNA:   3'- uGCUGu---CGCCGCGCCGCUA----UGGCu-AG- -5'
18987 5' -58.1 NC_004684.1 + 63390 0.7 0.394548
Target:  5'- cCGAUGGCGGCGUaGCGGUAcucCCGAc- -3'
miRNA:   3'- uGCUGUCGCCGCGcCGCUAU---GGCUag -5'
18987 5' -58.1 NC_004684.1 + 62962 0.68 0.478479
Target:  5'- gACGAUGGUGGCGUgcucGGUGGUgcgcacgugGCCGGUg -3'
miRNA:   3'- -UGCUGUCGCCGCG----CCGCUA---------UGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 61402 0.75 0.180312
Target:  5'- -gGGCGGCGGCccgGCGGCGGUGCUGccggaaAUCg -3'
miRNA:   3'- ugCUGUCGCCG---CGCCGCUAUGGC------UAG- -5'
18987 5' -58.1 NC_004684.1 + 60626 0.74 0.210629
Target:  5'- uCGACGGCaccgGGCGCGGCGAgaucaGCCugcGGUCg -3'
miRNA:   3'- uGCUGUCG----CCGCGCCGCUa----UGG---CUAG- -5'
18987 5' -58.1 NC_004684.1 + 59638 0.68 0.518508
Target:  5'- uGCGACaacGGCGcGCGCuGGCGGUGCagGAc- -3'
miRNA:   3'- -UGCUG---UCGC-CGCG-CCGCUAUGg-CUag -5'
18987 5' -58.1 NC_004684.1 + 59097 0.7 0.412376
Target:  5'- aACGcCAGgaacUGGCGCaguccGGCGAUGCCGAa- -3'
miRNA:   3'- -UGCuGUC----GCCGCG-----CCGCUAUGGCUag -5'
18987 5' -58.1 NC_004684.1 + 59012 0.66 0.601952
Target:  5'- uGCGcCAGUuccuGGCGUuugaGGuCGAUGCCGAUg -3'
miRNA:   3'- -UGCuGUCG----CCGCG----CC-GCUAUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 58331 0.66 0.591358
Target:  5'- gGCG-CGGCaGGUGCGGCaacuGAccuUGCCGGUg -3'
miRNA:   3'- -UGCuGUCG-CCGCGCCG----CU---AUGGCUAg -5'
18987 5' -58.1 NC_004684.1 + 57744 0.69 0.449479
Target:  5'- gGCGGCAGCuGCGCaGUGAg--CGGUCa -3'
miRNA:   3'- -UGCUGUCGcCGCGcCGCUaugGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 57205 0.67 0.549379
Target:  5'- -aGGCGGCGGCGCGaUGGUgcucagccuGCCGGa- -3'
miRNA:   3'- ugCUGUCGCCGCGCcGCUA---------UGGCUag -5'
18987 5' -58.1 NC_004684.1 + 56452 0.68 0.518508
Target:  5'- ----gAGCGGUGCcgGGCGAUcaGCUGGUCg -3'
miRNA:   3'- ugcugUCGCCGCG--CCGCUA--UGGCUAG- -5'
18987 5' -58.1 NC_004684.1 + 56177 0.71 0.336216
Target:  5'- gACGACGGCGGCGCuauCGAgcgcCCGGUg -3'
miRNA:   3'- -UGCUGUCGCCGCGcc-GCUau--GGCUAg -5'
18987 5' -58.1 NC_004684.1 + 56108 0.66 0.601952
Target:  5'- gUGGcCAGCaGCGUGGUGGUGCgCGAc- -3'
miRNA:   3'- uGCU-GUCGcCGCGCCGCUAUG-GCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.