miRNA display CGI


Results 41 - 60 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 13263 0.67 0.851744
Target:  5'- uGACCGCCAGC--GCGcUGGUGGcCGCc -3'
miRNA:   3'- cCUGGCGGUCGgcUGC-AUUAUU-GCGu -5'
18988 3' -53 NC_004684.1 + 29677 0.67 0.851744
Target:  5'- cGGCCGaCCAGaCCGcGCGUGc--GCGCGu -3'
miRNA:   3'- cCUGGC-GGUC-GGC-UGCAUuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 25897 0.67 0.851744
Target:  5'- uGGCCGCCAcCCGGCcaguUGGUGACGa- -3'
miRNA:   3'- cCUGGCGGUcGGCUGc---AUUAUUGCgu -5'
18988 3' -53 NC_004684.1 + 46917 0.67 0.851744
Target:  5'- uGAgCGCCGguuGCCGACaGUGu--GCGCAc -3'
miRNA:   3'- cCUgGCGGU---CGGCUG-CAUuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 54381 0.67 0.851744
Target:  5'- gGGGCCGaugcgcgcacccCCGGCCGG-GUGGcGGCGCu -3'
miRNA:   3'- -CCUGGC------------GGUCGGCUgCAUUaUUGCGu -5'
18988 3' -53 NC_004684.1 + 15035 0.67 0.8509
Target:  5'- -cGCCGaCCGGCuccuggaCGACGUGggGACGCc -3'
miRNA:   3'- ccUGGC-GGUCG-------GCUGCAUuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 62937 0.67 0.8509
Target:  5'- -aGCCGaCCAgcgcgcggcgcgcGCCGACGaUGGUGGCGUg -3'
miRNA:   3'- ccUGGC-GGU-------------CGGCUGC-AUUAUUGCGu -5'
18988 3' -53 NC_004684.1 + 26467 0.67 0.843198
Target:  5'- aGAUCGCC-GCCGACGUugccGGUGcCGUu -3'
miRNA:   3'- cCUGGCGGuCGGCUGCA----UUAUuGCGu -5'
18988 3' -53 NC_004684.1 + 32743 0.67 0.843198
Target:  5'- cGACCGguacgucgCGGCCGACcUGGUGGCGUg -3'
miRNA:   3'- cCUGGCg-------GUCGGCUGcAUUAUUGCGu -5'
18988 3' -53 NC_004684.1 + 20234 0.67 0.843198
Target:  5'- cGGGCCGUCA-CCGGCG-AAgaacCGCAc -3'
miRNA:   3'- -CCUGGCGGUcGGCUGCaUUauu-GCGU- -5'
18988 3' -53 NC_004684.1 + 3687 0.67 0.837964
Target:  5'- cGGCgGCCcaguGCgCGACGUAcuccacguccccgcuGUGGCGCAc -3'
miRNA:   3'- cCUGgCGGu---CG-GCUGCAU---------------UAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 55553 0.67 0.834431
Target:  5'- -cGCCGCUGGCCGcCGUGGcccgGugGCc -3'
miRNA:   3'- ccUGGCGGUCGGCuGCAUUa---UugCGu -5'
18988 3' -53 NC_004684.1 + 45972 0.67 0.834431
Target:  5'- -cGCCGCCAGCgugGACGgc---GCGCAc -3'
miRNA:   3'- ccUGGCGGUCGg--CUGCauuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 11790 0.67 0.834431
Target:  5'- uGGGCCGaCCAGgccaCCGugGaGAagGGCGCGa -3'
miRNA:   3'- -CCUGGC-GGUC----GGCugCaUUa-UUGCGU- -5'
18988 3' -53 NC_004684.1 + 65562 0.67 0.834431
Target:  5'- cGGACCcgGCCuGCCGgGCcUGGUAccgGCGCAc -3'
miRNA:   3'- -CCUGG--CGGuCGGC-UGcAUUAU---UGCGU- -5'
18988 3' -53 NC_004684.1 + 42239 0.67 0.834431
Target:  5'- cGACC-CauaGGCCGuGCGUGGUGGCGUc -3'
miRNA:   3'- cCUGGcGg--UCGGC-UGCAUUAUUGCGu -5'
18988 3' -53 NC_004684.1 + 6310 0.67 0.834431
Target:  5'- uGGCCGcCCAGCUGGcCGaGAUcGCGCc -3'
miRNA:   3'- cCUGGC-GGUCGGCU-GCaUUAuUGCGu -5'
18988 3' -53 NC_004684.1 + 35977 0.67 0.834431
Target:  5'- uGGCCGCgAccGCCGAaCGUGuccugcAUGACGCu -3'
miRNA:   3'- cCUGGCGgU--CGGCU-GCAU------UAUUGCGu -5'
18988 3' -53 NC_004684.1 + 66284 0.67 0.825454
Target:  5'- cGGACgGCCAcguugcggguGcCCGacggcagcggcGCGUAGUAGCGCu -3'
miRNA:   3'- -CCUGgCGGU----------C-GGC-----------UGCAUUAUUGCGu -5'
18988 3' -53 NC_004684.1 + 64633 0.67 0.825454
Target:  5'- -cGuuGCC-GUCGGCGUcGUGGCGCAc -3'
miRNA:   3'- ccUggCGGuCGGCUGCAuUAUUGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.