miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 48042 0.66 0.883572
Target:  5'- -cACCGCCAGCCG-UGcc--GACGCc -3'
miRNA:   3'- ccUGGCGGUCGGCuGCauuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 59960 0.66 0.883572
Target:  5'- uGGACCuGCCcggcaccgaccuGGCCGcCGUGGcGGCGUu -3'
miRNA:   3'- -CCUGG-CGG------------UCGGCuGCAUUaUUGCGu -5'
18988 3' -53 NC_004684.1 + 28139 0.66 0.883572
Target:  5'- gGGGCCGaCCA-CCGGCaUGAUcuCGCGc -3'
miRNA:   3'- -CCUGGC-GGUcGGCUGcAUUAuuGCGU- -5'
18988 3' -53 NC_004684.1 + 12325 0.66 0.883572
Target:  5'- cGGAUCGCC-GCCGucgggcggcACGUAccggaacccgGUGAUGCu -3'
miRNA:   3'- -CCUGGCGGuCGGC---------UGCAU----------UAUUGCGu -5'
18988 3' -53 NC_004684.1 + 58056 0.66 0.875983
Target:  5'- uGGugCGCCacgAGCUGAcCGU----GCGCAc -3'
miRNA:   3'- -CCugGCGG---UCGGCU-GCAuuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 63830 0.66 0.875983
Target:  5'- uGGCCGCCcgguGCCGGgucauCGUAcgGugGCc -3'
miRNA:   3'- cCUGGCGGu---CGGCU-----GCAUuaUugCGu -5'
18988 3' -53 NC_004684.1 + 65427 0.66 0.875983
Target:  5'- gGGGCCGCCAucguggccuGCCuGGCGcUGgccGUggUGCAc -3'
miRNA:   3'- -CCUGGCGGU---------CGG-CUGC-AU---UAuuGCGU- -5'
18988 3' -53 NC_004684.1 + 66737 0.66 0.868144
Target:  5'- cGGGCCGCC-GCCGAgGccaucGugGCc -3'
miRNA:   3'- -CCUGGCGGuCGGCUgCauua-UugCGu -5'
18988 3' -53 NC_004684.1 + 60152 0.66 0.868144
Target:  5'- cGGGCCGCCGGgCCGcGCGccacgAGUGCGa -3'
miRNA:   3'- -CCUGGCGGUC-GGC-UGCauua-UUGCGU- -5'
18988 3' -53 NC_004684.1 + 47880 0.66 0.868144
Target:  5'- -cGCCGCCgagaacauccuGGCCGAC----UGACGCAc -3'
miRNA:   3'- ccUGGCGG-----------UCGGCUGcauuAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 20400 0.66 0.868144
Target:  5'- uGGCCGCC-GCCGcCaUGGUGucgGCGCAc -3'
miRNA:   3'- cCUGGCGGuCGGCuGcAUUAU---UGCGU- -5'
18988 3' -53 NC_004684.1 + 36768 0.66 0.868144
Target:  5'- aGGGCCGCgCccgguGCCGACGcUGGUcGGCgGCGg -3'
miRNA:   3'- -CCUGGCG-Gu----CGGCUGC-AUUA-UUG-CGU- -5'
18988 3' -53 NC_004684.1 + 55936 0.66 0.860062
Target:  5'- uGGACCGgggcgaGGCCGACGcc--GACGCc -3'
miRNA:   3'- -CCUGGCgg----UCGGCUGCauuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 63279 0.66 0.860062
Target:  5'- gGGGCCGuUCGGCCG-CGUcgAGUcgacccGGCGCGc -3'
miRNA:   3'- -CCUGGC-GGUCGGCuGCA--UUA------UUGCGU- -5'
18988 3' -53 NC_004684.1 + 64998 0.66 0.860062
Target:  5'- cGGCuCGCCAG-CGGCGUugguGGUGugGCc -3'
miRNA:   3'- cCUG-GCGGUCgGCUGCA----UUAUugCGu -5'
18988 3' -53 NC_004684.1 + 29677 0.67 0.851744
Target:  5'- cGGCCGaCCAGaCCGcGCGUGc--GCGCGu -3'
miRNA:   3'- cCUGGC-GGUC-GGC-UGCAUuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 13596 0.67 0.851744
Target:  5'- aGGACCaggGCUGGCCGGaacucaccgaGUGGUuccuGCGCAc -3'
miRNA:   3'- -CCUGG---CGGUCGGCUg---------CAUUAu---UGCGU- -5'
18988 3' -53 NC_004684.1 + 25897 0.67 0.851744
Target:  5'- uGGCCGCCAcCCGGCcaguUGGUGACGa- -3'
miRNA:   3'- cCUGGCGGUcGGCUGc---AUUAUUGCgu -5'
18988 3' -53 NC_004684.1 + 9562 0.67 0.851744
Target:  5'- cGGugCGCCgcgaacacguGGCCGACcUGAUccGugGCu -3'
miRNA:   3'- -CCugGCGG----------UCGGCUGcAUUA--UugCGu -5'
18988 3' -53 NC_004684.1 + 9867 0.67 0.851744
Target:  5'- -uGCCGCCGGaucCCGACGcc---GCGCAg -3'
miRNA:   3'- ccUGGCGGUC---GGCUGCauuauUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.