miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 31822 0.66 0.897977
Target:  5'- aGGGCCGUCGGC-GGCGguGUGuCGCc -3'
miRNA:   3'- -CCUGGCGGUCGgCUGCauUAUuGCGu -5'
18988 3' -53 NC_004684.1 + 16445 0.66 0.890904
Target:  5'- cGGCCGCCAGCUuGuCGgcc-AGCGCc -3'
miRNA:   3'- cCUGGCGGUCGG-CuGCauuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 52811 0.66 0.895883
Target:  5'- aGGACagCGCCuacgagcguggcgaGGCCGACGg----GCGCGa -3'
miRNA:   3'- -CCUG--GCGG--------------UCGGCUGCauuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 65427 0.66 0.875983
Target:  5'- gGGGCCGCCAucguggccuGCCuGGCGcUGgccGUggUGCAc -3'
miRNA:   3'- -CCUGGCGGU---------CGG-CUGC-AU---UAuuGCGU- -5'
18988 3' -53 NC_004684.1 + 13845 0.66 0.883572
Target:  5'- uGGAgCGCCAGgccguugagcaCCGAgGUGGUGGCa-- -3'
miRNA:   3'- -CCUgGCGGUC-----------GGCUgCAUUAUUGcgu -5'
18988 3' -53 NC_004684.1 + 46845 0.66 0.897977
Target:  5'- ---gCGCuCAGCugCGGCGUAGUAaccGCGCAu -3'
miRNA:   3'- ccugGCG-GUCG--GCUGCAUUAU---UGCGU- -5'
18988 3' -53 NC_004684.1 + 63830 0.66 0.875983
Target:  5'- uGGCCGCCcgguGCCGGgucauCGUAcgGugGCc -3'
miRNA:   3'- cCUGGCGGu---CGGCU-----GCAUuaUugCGu -5'
18988 3' -53 NC_004684.1 + 65189 0.66 0.897977
Target:  5'- cGGACgaCGCCAcccuGCuCGACGgcAUGaucaccGCGCAg -3'
miRNA:   3'- -CCUG--GCGGU----CG-GCUGCauUAU------UGCGU- -5'
18988 3' -53 NC_004684.1 + 40163 0.66 0.890904
Target:  5'- aGGACgGCCuuGCUGGCGgcgAAgcucauGCGCu -3'
miRNA:   3'- -CCUGgCGGu-CGGCUGCa--UUau----UGCGu -5'
18988 3' -53 NC_004684.1 + 60152 0.66 0.868144
Target:  5'- cGGGCCGCCGGgCCGcGCGccacgAGUGCGa -3'
miRNA:   3'- -CCUGGCGGUC-GGC-UGCauua-UUGCGU- -5'
18988 3' -53 NC_004684.1 + 45112 0.66 0.897977
Target:  5'- cGGcAUCGUCGguGCCGACGgcAUGAC-CAa -3'
miRNA:   3'- -CC-UGGCGGU--CGGCUGCauUAUUGcGU- -5'
18988 3' -53 NC_004684.1 + 51057 0.66 0.897977
Target:  5'- gGGuCgGCCua-CGACGUGcUGGCGCAc -3'
miRNA:   3'- -CCuGgCGGucgGCUGCAUuAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 59960 0.66 0.883572
Target:  5'- uGGACCuGCCcggcaccgaccuGGCCGcCGUGGcGGCGUu -3'
miRNA:   3'- -CCUGG-CGG------------UCGGCuGCAUUaUUGCGu -5'
18988 3' -53 NC_004684.1 + 66737 0.66 0.868144
Target:  5'- cGGGCCGCC-GCCGAgGccaucGugGCc -3'
miRNA:   3'- -CCUGGCGGuCGGCUgCauua-UugCGu -5'
18988 3' -53 NC_004684.1 + 48042 0.66 0.883572
Target:  5'- -cACCGCCAGCCG-UGcc--GACGCc -3'
miRNA:   3'- ccUGGCGGUCGGCuGCauuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 14751 0.67 0.815346
Target:  5'- gGGACCGUcgcgguuccugauCAGCggcgugGACGUAcUGGCGCAc -3'
miRNA:   3'- -CCUGGCG-------------GUCGg-----CUGCAUuAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 29677 0.67 0.851744
Target:  5'- cGGCCGaCCAGaCCGcGCGUGc--GCGCGu -3'
miRNA:   3'- cCUGGC-GGUC-GGC-UGCAUuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 12826 0.67 0.815346
Target:  5'- aGGACgGCgGcucugcuGCCGACGUGGU--CGCGg -3'
miRNA:   3'- -CCUGgCGgU-------CGGCUGCAUUAuuGCGU- -5'
18988 3' -53 NC_004684.1 + 15035 0.67 0.8509
Target:  5'- -cGCCGaCCGGCuccuggaCGACGUGggGACGCc -3'
miRNA:   3'- ccUGGC-GGUCG-------GCUGCAUuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 32743 0.67 0.843198
Target:  5'- cGACCGguacgucgCGGCCGACcUGGUGGCGUg -3'
miRNA:   3'- cCUGGCg-------GUCGGCUGcAUUAUUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.