miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 47185 0.66 0.890183
Target:  5'- aGGGCCGCCGcuGCgCGGCGaacggugcggcggUGGUAgguaugcaucaGCGCAc -3'
miRNA:   3'- -CCUGGCGGU--CG-GCUGC-------------AUUAU-----------UGCGU- -5'
18988 3' -53 NC_004684.1 + 55936 0.66 0.860062
Target:  5'- uGGACCGgggcgaGGCCGACGcc--GACGCc -3'
miRNA:   3'- -CCUGGCgg----UCGGCUGCauuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 63830 0.66 0.875983
Target:  5'- uGGCCGCCcgguGCCGGgucauCGUAcgGugGCc -3'
miRNA:   3'- cCUGGCGGu---CGGCU-----GCAUuaUugCGu -5'
18988 3' -53 NC_004684.1 + 46845 0.66 0.897977
Target:  5'- ---gCGCuCAGCugCGGCGUAGUAaccGCGCAu -3'
miRNA:   3'- ccugGCG-GUCG--GCUGCAUUAU---UGCGU- -5'
18988 3' -53 NC_004684.1 + 40163 0.66 0.890904
Target:  5'- aGGACgGCCuuGCUGGCGgcgAAgcucauGCGCu -3'
miRNA:   3'- -CCUGgCGGu-CGGCUGCa--UUau----UGCGu -5'
18988 3' -53 NC_004684.1 + 53745 0.66 0.890904
Target:  5'- cGACgGCCAGgaacaCCGAgGUGGUGAUGg- -3'
miRNA:   3'- cCUGgCGGUC-----GGCUgCAUUAUUGCgu -5'
18988 3' -53 NC_004684.1 + 47880 0.66 0.868144
Target:  5'- -cGCCGCCgagaacauccuGGCCGAC----UGACGCAc -3'
miRNA:   3'- ccUGGCGG-----------UCGGCUGcauuAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 11654 0.66 0.897977
Target:  5'- cGGCCacGCCAGCaCGGCGgcc-AACGUg -3'
miRNA:   3'- cCUGG--CGGUCG-GCUGCauuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 5752 0.66 0.883572
Target:  5'- uGGACgGCCaaGGgUGACGcGGUGggGCGCAg -3'
miRNA:   3'- -CCUGgCGG--UCgGCUGCaUUAU--UGCGU- -5'
18988 3' -53 NC_004684.1 + 64998 0.66 0.860062
Target:  5'- cGGCuCGCCAG-CGGCGUugguGGUGugGCc -3'
miRNA:   3'- cCUG-GCGGUCgGCUGCA----UUAUugCGu -5'
18988 3' -53 NC_004684.1 + 2282 0.66 0.883572
Target:  5'- -uGCCGCCAGCCugGGCcac--GACGCGg -3'
miRNA:   3'- ccUGGCGGUCGG--CUGcauuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 58056 0.66 0.875983
Target:  5'- uGGugCGCCacgAGCUGAcCGU----GCGCAc -3'
miRNA:   3'- -CCugGCGG---UCGGCU-GCAuuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 20400 0.66 0.868144
Target:  5'- uGGCCGCC-GCCGcCaUGGUGucgGCGCAc -3'
miRNA:   3'- cCUGGCGGuCGGCuGcAUUAU---UGCGU- -5'
18988 3' -53 NC_004684.1 + 13642 0.66 0.890904
Target:  5'- -cGCCGCCGcGCaccugCGugGUGucucGUGGCGCAc -3'
miRNA:   3'- ccUGGCGGU-CG-----GCugCAU----UAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 66737 0.66 0.868144
Target:  5'- cGGGCCGCC-GCCGAgGccaucGugGCc -3'
miRNA:   3'- -CCUGGCGGuCGGCUgCauua-UugCGu -5'
18988 3' -53 NC_004684.1 + 63279 0.66 0.860062
Target:  5'- gGGGCCGuUCGGCCG-CGUcgAGUcgacccGGCGCGc -3'
miRNA:   3'- -CCUGGC-GGUCGGCuGCA--UUA------UUGCGU- -5'
18988 3' -53 NC_004684.1 + 60152 0.66 0.868144
Target:  5'- cGGGCCGCCGGgCCGcGCGccacgAGUGCGa -3'
miRNA:   3'- -CCUGGCGGUC-GGC-UGCauua-UUGCGU- -5'
18988 3' -53 NC_004684.1 + 28084 0.66 0.890904
Target:  5'- cGGGCCGCC-GCgCGACccgcaccgGGUggUGCGg -3'
miRNA:   3'- -CCUGGCGGuCG-GCUGca------UUAuuGCGU- -5'
18988 3' -53 NC_004684.1 + 24623 0.66 0.883572
Target:  5'- uGGGCgGCCAgGCCaACGUcu--ACGCGu -3'
miRNA:   3'- -CCUGgCGGU-CGGcUGCAuuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 36768 0.66 0.868144
Target:  5'- aGGGCCGCgCccgguGCCGACGcUGGUcGGCgGCGg -3'
miRNA:   3'- -CCUGGCG-Gu----CGGCUGC-AUUA-UUG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.