miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 53023 0.7 0.650671
Target:  5'- cGGuCaGCCAGUCGGCGUAcaccuGCGCGg -3'
miRNA:   3'- -CCuGgCGGUCGGCUGCAUuau--UGCGU- -5'
18988 3' -53 NC_004684.1 + 15283 0.71 0.617792
Target:  5'- uGGCCaCCAGcCCGACGUuuggcUGGCGCGa -3'
miRNA:   3'- cCUGGcGGUC-GGCUGCAuu---AUUGCGU- -5'
18988 3' -53 NC_004684.1 + 41257 0.71 0.628752
Target:  5'- aGGCCuCCAGCUGGUGUGGUGGgGCAa -3'
miRNA:   3'- cCUGGcGGUCGGCUGCAUUAUUgCGU- -5'
18988 3' -53 NC_004684.1 + 2458 0.71 0.628752
Target:  5'- uGGGCgGCCAGCuCGGCGUGc---CGUAc -3'
miRNA:   3'- -CCUGgCGGUCG-GCUGCAUuauuGCGU- -5'
18988 3' -53 NC_004684.1 + 61323 0.71 0.628752
Target:  5'- cGGGCCGCCGcccucGgCGGCGUAG-GugGCGg -3'
miRNA:   3'- -CCUGGCGGU-----CgGCUGCAUUaUugCGU- -5'
18988 3' -53 NC_004684.1 + 52901 0.71 0.639715
Target:  5'- aGGAgcguCCgGCCAGCaCGGCGgcGUGGcCGCAu -3'
miRNA:   3'- -CCU----GG-CGGUCG-GCUGCauUAUU-GCGU- -5'
18988 3' -53 NC_004684.1 + 23767 0.71 0.639715
Target:  5'- cGGGCCGUgGgGCgCGGCGUug-GGCGCGa -3'
miRNA:   3'- -CCUGGCGgU-CG-GCUGCAuuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 12069 0.7 0.649576
Target:  5'- uGGCCGCCgAGCgCGACGaGGUGcuggcccGCGCGg -3'
miRNA:   3'- cCUGGCGG-UCG-GCUGCaUUAU-------UGCGU- -5'
18988 3' -53 NC_004684.1 + 2053 0.7 0.650671
Target:  5'- uGGACUacgGCCAGCgCcACGUGGUGgaGCGCGc -3'
miRNA:   3'- -CCUGG---CGGUCG-GcUGCAUUAU--UGCGU- -5'
18988 3' -53 NC_004684.1 + 10016 0.71 0.606845
Target:  5'- cGGACCuGCCGcgcGCCGACcggg-AGCGCAu -3'
miRNA:   3'- -CCUGG-CGGU---CGGCUGcauuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 35831 0.72 0.585024
Target:  5'- -cGCCGCCAGCuuCGACGUAGgcaucucccCGCAg -3'
miRNA:   3'- ccUGGCGGUCG--GCUGCAUUauu------GCGU- -5'
18988 3' -53 NC_004684.1 + 31873 0.72 0.585024
Target:  5'- -aGCUGCCcGCCGACGUGcuggugGACGCc -3'
miRNA:   3'- ccUGGCGGuCGGCUGCAUua----UUGCGu -5'
18988 3' -53 NC_004684.1 + 16315 0.78 0.273342
Target:  5'- cGGGCCGCCGG-UGAUGUAAUGACcaGCGa -3'
miRNA:   3'- -CCUGGCGGUCgGCUGCAUUAUUG--CGU- -5'
18988 3' -53 NC_004684.1 + 63379 0.76 0.375239
Target:  5'- cGACgCGCCAGCCGAUGgc--GGCGUAg -3'
miRNA:   3'- cCUG-GCGGUCGGCUGCauuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 42904 0.74 0.459408
Target:  5'- aGACCGCCA-CCGACG-AcgAACGCc -3'
miRNA:   3'- cCUGGCGGUcGGCUGCaUuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 10724 0.74 0.469374
Target:  5'- aGGGCaGCCAgGCCGACGaGAUcgagcGGCGCAa -3'
miRNA:   3'- -CCUGgCGGU-CGGCUGCaUUA-----UUGCGU- -5'
18988 3' -53 NC_004684.1 + 3036 0.74 0.469374
Target:  5'- gGGGCCGCacaacgaGGCCcGgGUGGUGGCGCGc -3'
miRNA:   3'- -CCUGGCGg------UCGGcUgCAUUAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 706 0.73 0.53129
Target:  5'- -aGCCGCCGGUgGACGgccUGGCGCu -3'
miRNA:   3'- ccUGGCGGUCGgCUGCauuAUUGCGu -5'
18988 3' -53 NC_004684.1 + 41765 0.72 0.541912
Target:  5'- cGGuugaGCCAGUgGGCGUAcgGACGCGg -3'
miRNA:   3'- -CCugg-CGGUCGgCUGCAUuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 28272 0.72 0.541912
Target:  5'- uGGugCGCgaGGCCGcugGCGUGGUGcucACGCAg -3'
miRNA:   3'- -CCugGCGg-UCGGC---UGCAUUAU---UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.