miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 469 0.68 0.806903
Target:  5'- gGGGCCGUCGGUcuCGGCcaGGUcGCGCAu -3'
miRNA:   3'- -CCUGGCGGUCG--GCUGcaUUAuUGCGU- -5'
18988 3' -53 NC_004684.1 + 609 0.68 0.801192
Target:  5'- cGGGCCGCCugaccuggacgaccuGGCCGACGagcacGGCGa- -3'
miRNA:   3'- -CCUGGCGG---------------UCGGCUGCauua-UUGCgu -5'
18988 3' -53 NC_004684.1 + 706 0.73 0.53129
Target:  5'- -aGCCGCCGGUgGACGgccUGGCGCu -3'
miRNA:   3'- ccUGGCGGUCGgCUGCauuAUUGCGu -5'
18988 3' -53 NC_004684.1 + 874 0.68 0.767706
Target:  5'- aGGACgGCCAGC--ACGUGAUccccGCGCc -3'
miRNA:   3'- -CCUGgCGGUCGgcUGCAUUAu---UGCGu -5'
18988 3' -53 NC_004684.1 + 1309 0.77 0.31738
Target:  5'- aGGCCGCCgaGGCCGACGaAGUcGACGCc -3'
miRNA:   3'- cCUGGCGG--UCGGCUGCaUUA-UUGCGu -5'
18988 3' -53 NC_004684.1 + 1828 0.74 0.449556
Target:  5'- cGGACCGCCcucGGUgGugGUGAgguCGCGg -3'
miRNA:   3'- -CCUGGCGG---UCGgCugCAUUauuGCGU- -5'
18988 3' -53 NC_004684.1 + 2014 0.68 0.765683
Target:  5'- uGGACCGCC--CCGACGUugaccaggccAGCGCc -3'
miRNA:   3'- -CCUGGCGGucGGCUGCAuua-------UUGCGu -5'
18988 3' -53 NC_004684.1 + 2053 0.7 0.650671
Target:  5'- uGGACUacgGCCAGCgCcACGUGGUGgaGCGCGc -3'
miRNA:   3'- -CCUGG---CGGUCG-GcUGCAUUAU--UGCGU- -5'
18988 3' -53 NC_004684.1 + 2282 0.66 0.883572
Target:  5'- -uGCCGCCAGCCugGGCcac--GACGCGg -3'
miRNA:   3'- ccUGGCGGUCGG--CUGcauuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 2458 0.71 0.628752
Target:  5'- uGGGCgGCCAGCuCGGCGUGc---CGUAc -3'
miRNA:   3'- -CCUGgCGGUCG-GCUGCAUuauuGCGU- -5'
18988 3' -53 NC_004684.1 + 3036 0.74 0.469374
Target:  5'- gGGGCCGCacaacgaGGCCcGgGUGGUGGCGCGc -3'
miRNA:   3'- -CCUGGCGg------UCGGcUgCAUUAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 3687 0.67 0.837964
Target:  5'- cGGCgGCCcaguGCgCGACGUAcuccacguccccgcuGUGGCGCAc -3'
miRNA:   3'- cCUGgCGGu---CG-GCUGCAU---------------UAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 4587 0.74 0.439822
Target:  5'- uGGCCGCCAGCuCGGCGggguuacGGUAGCGg- -3'
miRNA:   3'- cCUGGCGGUCG-GCUGCa------UUAUUGCgu -5'
18988 3' -53 NC_004684.1 + 5752 0.66 0.883572
Target:  5'- uGGACgGCCaaGGgUGACGcGGUGggGCGCAg -3'
miRNA:   3'- -CCUGgCGG--UCgGCUGCaUUAU--UGCGU- -5'
18988 3' -53 NC_004684.1 + 6003 0.68 0.787626
Target:  5'- -cGCgGCCAGCCGGuCGU----GCGCGa -3'
miRNA:   3'- ccUGgCGGUCGGCU-GCAuuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 6234 0.7 0.694222
Target:  5'- uGGGCgGCCAGgccuUCGACG--GUGAUGCAg -3'
miRNA:   3'- -CCUGgCGGUC----GGCUGCauUAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 6310 0.67 0.834431
Target:  5'- uGGCCGcCCAGCUGGcCGaGAUcGCGCc -3'
miRNA:   3'- cCUGGC-GGUCGGCU-GCaUUAuUGCGu -5'
18988 3' -53 NC_004684.1 + 7536 0.68 0.771737
Target:  5'- cGGuccuCCaGCCAGUCGGCGaaacgggucagugccUGGUAGCGCc -3'
miRNA:   3'- -CCu---GG-CGGUCGGCUGC---------------AUUAUUGCGu -5'
18988 3' -53 NC_004684.1 + 8120 1.12 0.001585
Target:  5'- aGGACCGCCAGCCGACGUAAUAACGCAg -3'
miRNA:   3'- -CCUGGCGGUCGGCUGCAUUAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 9562 0.67 0.851744
Target:  5'- cGGugCGCCgcgaacacguGGCCGACcUGAUccGugGCu -3'
miRNA:   3'- -CCugGCGG----------UCGGCUGcAUUA--UugCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.