miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 9867 0.67 0.851744
Target:  5'- -uGCCGCCGGaucCCGACGcc---GCGCAg -3'
miRNA:   3'- ccUGGCGGUC---GGCUGCauuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 10016 0.71 0.606845
Target:  5'- cGGACCuGCCGcgcGCCGACcggg-AGCGCAu -3'
miRNA:   3'- -CCUGG-CGGU---CGGCUGcauuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 10724 0.74 0.469374
Target:  5'- aGGGCaGCCAgGCCGACGaGAUcgagcGGCGCAa -3'
miRNA:   3'- -CCUGgCGGU-CGGCUGCaUUA-----UUGCGU- -5'
18988 3' -53 NC_004684.1 + 11654 0.66 0.897977
Target:  5'- cGGCCacGCCAGCaCGGCGgcc-AACGUg -3'
miRNA:   3'- cCUGG--CGGUCG-GCUGCauuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 11742 0.73 0.499908
Target:  5'- uGGCCGCCGuGCUGGCGUGGccGAUGCc -3'
miRNA:   3'- cCUGGCGGU-CGGCUGCAUUa-UUGCGu -5'
18988 3' -53 NC_004684.1 + 11790 0.67 0.834431
Target:  5'- uGGGCCGaCCAGgccaCCGugGaGAagGGCGCGa -3'
miRNA:   3'- -CCUGGC-GGUC----GGCugCaUUa-UUGCGU- -5'
18988 3' -53 NC_004684.1 + 11982 0.68 0.787626
Target:  5'- cGACCGgCGGCacCGACGgcAUGAcccCGCAg -3'
miRNA:   3'- cCUGGCgGUCG--GCUGCauUAUU---GCGU- -5'
18988 3' -53 NC_004684.1 + 12008 0.67 0.825454
Target:  5'- cGGACgGCCcuGGCUGuCGgUGGUGccGCGCAc -3'
miRNA:   3'- -CCUGgCGG--UCGGCuGC-AUUAU--UGCGU- -5'
18988 3' -53 NC_004684.1 + 12063 0.67 0.851744
Target:  5'- cGGuGCCGCCGGUCG-CGgugu-GCGCc -3'
miRNA:   3'- -CC-UGGCGGUCGGCuGCauuauUGCGu -5'
18988 3' -53 NC_004684.1 + 12069 0.7 0.649576
Target:  5'- uGGCCGCCgAGCgCGACGaGGUGcuggcccGCGCGg -3'
miRNA:   3'- cCUGGCGG-UCG-GCUGCaUUAU-------UGCGU- -5'
18988 3' -53 NC_004684.1 + 12325 0.66 0.883572
Target:  5'- cGGAUCGCC-GCCGucgggcggcACGUAccggaacccgGUGAUGCu -3'
miRNA:   3'- -CCUGGCGGuCGGC---------UGCAU----------UAUUGCGu -5'
18988 3' -53 NC_004684.1 + 12656 0.73 0.520745
Target:  5'- -aGCCGCCugcGCCuGACGUGcgAGCGCc -3'
miRNA:   3'- ccUGGCGGu--CGG-CUGCAUuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 12826 0.67 0.815346
Target:  5'- aGGACgGCgGcucugcuGCCGACGUGGU--CGCGg -3'
miRNA:   3'- -CCUGgCGgU-------CGGCUGCAUUAuuGCGU- -5'
18988 3' -53 NC_004684.1 + 13126 0.71 0.595919
Target:  5'- cGGaaGCCGaCCGGCCcggcGACGUAAccgGGCGCGu -3'
miRNA:   3'- -CC--UGGC-GGUCGG----CUGCAUUa--UUGCGU- -5'
18988 3' -53 NC_004684.1 + 13263 0.67 0.851744
Target:  5'- uGACCGCCAGC--GCGcUGGUGGcCGCc -3'
miRNA:   3'- cCUGGCGGUCGgcUGC-AUUAUU-GCGu -5'
18988 3' -53 NC_004684.1 + 13596 0.67 0.851744
Target:  5'- aGGACCaggGCUGGCCGGaacucaccgaGUGGUuccuGCGCAc -3'
miRNA:   3'- -CCUGG---CGGUCGGCUg---------CAUUAu---UGCGU- -5'
18988 3' -53 NC_004684.1 + 13642 0.66 0.890904
Target:  5'- -cGCCGCCGcGCaccugCGugGUGucucGUGGCGCAc -3'
miRNA:   3'- ccUGGCGGU-CG-----GCugCAU----UAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 13845 0.66 0.883572
Target:  5'- uGGAgCGCCAGgccguugagcaCCGAgGUGGUGGCa-- -3'
miRNA:   3'- -CCUgGCGGUC-----------GGCUgCAUUAUUGcgu -5'
18988 3' -53 NC_004684.1 + 14047 0.68 0.767706
Target:  5'- cGACUGCCAGUcagCGACGUAcugGAgGUAa -3'
miRNA:   3'- cCUGGCGGUCG---GCUGCAUua-UUgCGU- -5'
18988 3' -53 NC_004684.1 + 14751 0.67 0.815346
Target:  5'- gGGACCGUcgcgguuccugauCAGCggcgugGACGUAcUGGCGCAc -3'
miRNA:   3'- -CCUGGCG-------------GUCGg-----CUGCAUuAUUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.