miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 8120 1.12 0.001585
Target:  5'- aGGACCGCCAGCCGACGUAAUAACGCAg -3'
miRNA:   3'- -CCUGGCGGUCGGCUGCAUUAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 26326 0.78 0.259792
Target:  5'- cGGGCCGCCGauuGCCGACGcGGU-GCGCu -3'
miRNA:   3'- -CCUGGCGGU---CGGCUGCaUUAuUGCGu -5'
18988 3' -53 NC_004684.1 + 16315 0.78 0.273342
Target:  5'- cGGGCCGCCGG-UGAUGUAAUGACcaGCGa -3'
miRNA:   3'- -CCUGGCGGUCgGCUGCAUUAUUG--CGU- -5'
18988 3' -53 NC_004684.1 + 1309 0.77 0.31738
Target:  5'- aGGCCGCCgaGGCCGACGaAGUcGACGCc -3'
miRNA:   3'- cCUGGCGG--UCGGCUGCaUUA-UUGCGu -5'
18988 3' -53 NC_004684.1 + 22532 0.76 0.333201
Target:  5'- gGGAUCGCCGccgcGCCGACGgcGAUGGCGUu -3'
miRNA:   3'- -CCUGGCGGU----CGGCUGCa-UUAUUGCGu -5'
18988 3' -53 NC_004684.1 + 63379 0.76 0.375239
Target:  5'- cGACgCGCCAGCCGAUGgc--GGCGUAg -3'
miRNA:   3'- cCUG-GCGGUCGGCUGCauuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 4587 0.74 0.439822
Target:  5'- uGGCCGCCAGCuCGGCGggguuacGGUAGCGg- -3'
miRNA:   3'- cCUGGCGGUCG-GCUGCa------UUAUUGCgu -5'
18988 3' -53 NC_004684.1 + 1828 0.74 0.449556
Target:  5'- cGGACCGCCcucGGUgGugGUGAgguCGCGg -3'
miRNA:   3'- -CCUGGCGG---UCGgCugCAUUauuGCGU- -5'
18988 3' -53 NC_004684.1 + 42904 0.74 0.459408
Target:  5'- aGACCGCCA-CCGACG-AcgAACGCc -3'
miRNA:   3'- cCUGGCGGUcGGCUGCaUuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 3036 0.74 0.469374
Target:  5'- gGGGCCGCacaacgaGGCCcGgGUGGUGGCGCGc -3'
miRNA:   3'- -CCUGGCGg------UCGGcUgCAUUAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 10724 0.74 0.469374
Target:  5'- aGGGCaGCCAgGCCGACGaGAUcgagcGGCGCAa -3'
miRNA:   3'- -CCUGgCGGU-CGGCUGCaUUA-----UUGCGU- -5'
18988 3' -53 NC_004684.1 + 11742 0.73 0.499908
Target:  5'- uGGCCGCCGuGCUGGCGUGGccGAUGCc -3'
miRNA:   3'- cCUGGCGGU-CGGCUGCAUUa-UUGCGu -5'
18988 3' -53 NC_004684.1 + 21361 0.73 0.499908
Target:  5'- cGGGCgCGCguGCCGGgGUGGUugaccuGGCGCAc -3'
miRNA:   3'- -CCUG-GCGguCGGCUgCAUUA------UUGCGU- -5'
18988 3' -53 NC_004684.1 + 12656 0.73 0.520745
Target:  5'- -aGCCGCCugcGCCuGACGUGcgAGCGCc -3'
miRNA:   3'- ccUGGCGGu--CGG-CUGCAUuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 706 0.73 0.53129
Target:  5'- -aGCCGCCGGUgGACGgccUGGCGCu -3'
miRNA:   3'- ccUGGCGGUCGgCUGCauuAUUGCGu -5'
18988 3' -53 NC_004684.1 + 28272 0.72 0.541912
Target:  5'- uGGugCGCgaGGCCGcugGCGUGGUGcucACGCAg -3'
miRNA:   3'- -CCugGCGg-UCGGC---UGCAUUAU---UGCGU- -5'
18988 3' -53 NC_004684.1 + 41765 0.72 0.541912
Target:  5'- cGGuugaGCCAGUgGGCGUAcgGACGCGg -3'
miRNA:   3'- -CCugg-CGGUCGgCUGCAUuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 61892 0.72 0.563358
Target:  5'- cGAcCCGCCuGCCGACGgggccgAGcUGGCGCGc -3'
miRNA:   3'- cCU-GGCGGuCGGCUGCa-----UU-AUUGCGU- -5'
18988 3' -53 NC_004684.1 + 60436 0.72 0.574167
Target:  5'- uGGcACCGCUGGCCGAacgcgcgGUGAUcGCGCu -3'
miRNA:   3'- -CC-UGGCGGUCGGCUg------CAUUAuUGCGu -5'
18988 3' -53 NC_004684.1 + 31873 0.72 0.585024
Target:  5'- -aGCUGCCcGCCGACGUGcuggugGACGCc -3'
miRNA:   3'- ccUGGCGGuCGGCUGCAUua----UUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.