miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 67386 0.69 0.757533
Target:  5'- -uGCCGCCGuuUCGACGUAAUGugGUc -3'
miRNA:   3'- ccUGGCGGUc-GGCUGCAUUAUugCGu -5'
18988 3' -53 NC_004684.1 + 66737 0.66 0.868144
Target:  5'- cGGGCCGCC-GCCGAgGccaucGugGCc -3'
miRNA:   3'- -CCUGGCGGuCGGCUgCauua-UugCGu -5'
18988 3' -53 NC_004684.1 + 66432 0.67 0.824545
Target:  5'- uGGCCGCCcGCCccggcgucaccggGACGUucgAGCGCu -3'
miRNA:   3'- cCUGGCGGuCGG-------------CUGCAuuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 66284 0.67 0.825454
Target:  5'- cGGACgGCCAcguugcggguGcCCGacggcagcggcGCGUAGUAGCGCu -3'
miRNA:   3'- -CCUGgCGGU----------C-GGC-----------UGCAUUAUUGCGu -5'
18988 3' -53 NC_004684.1 + 65562 0.67 0.834431
Target:  5'- cGGACCcgGCCuGCCGgGCcUGGUAccgGCGCAc -3'
miRNA:   3'- -CCUGG--CGGuCGGC-UGcAUUAU---UGCGU- -5'
18988 3' -53 NC_004684.1 + 65427 0.66 0.875983
Target:  5'- gGGGCCGCCAucguggccuGCCuGGCGcUGgccGUggUGCAc -3'
miRNA:   3'- -CCUGGCGGU---------CGG-CUGC-AU---UAuuGCGU- -5'
18988 3' -53 NC_004684.1 + 65189 0.66 0.897977
Target:  5'- cGGACgaCGCCAcccuGCuCGACGgcAUGaucaccGCGCAg -3'
miRNA:   3'- -CCUG--GCGGU----CG-GCUGCauUAU------UGCGU- -5'
18988 3' -53 NC_004684.1 + 64998 0.66 0.860062
Target:  5'- cGGCuCGCCAG-CGGCGUugguGGUGugGCc -3'
miRNA:   3'- cCUG-GCGGUCgGCUGCA----UUAUugCGu -5'
18988 3' -53 NC_004684.1 + 64725 0.68 0.787626
Target:  5'- cGGugCGCCAcgacGCCGACGgc--AACGa- -3'
miRNA:   3'- -CCugGCGGU----CGGCUGCauuaUUGCgu -5'
18988 3' -53 NC_004684.1 + 64633 0.67 0.825454
Target:  5'- -cGuuGCC-GUCGGCGUcGUGGCGCAc -3'
miRNA:   3'- ccUggCGGuCGGCUGCAuUAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 63830 0.66 0.875983
Target:  5'- uGGCCGCCcgguGCCGGgucauCGUAcgGugGCc -3'
miRNA:   3'- cCUGGCGGu---CGGCU-----GCAUuaUugCGu -5'
18988 3' -53 NC_004684.1 + 63591 0.7 0.672522
Target:  5'- aGGCCGCCcuGCUGGCGca--GGCGCAg -3'
miRNA:   3'- cCUGGCGGu-CGGCUGCauuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 63379 0.76 0.375239
Target:  5'- cGACgCGCCAGCCGAUGgc--GGCGUAg -3'
miRNA:   3'- cCUG-GCGGUCGGCUGCauuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 63279 0.66 0.860062
Target:  5'- gGGGCCGuUCGGCCG-CGUcgAGUcgacccGGCGCGc -3'
miRNA:   3'- -CCUGGC-GGUCGGCuGCA--UUA------UUGCGU- -5'
18988 3' -53 NC_004684.1 + 62937 0.67 0.8509
Target:  5'- -aGCCGaCCAgcgcgcggcgcgcGCCGACGaUGGUGGCGUg -3'
miRNA:   3'- ccUGGC-GGU-------------CGGCUGC-AUUAUUGCGu -5'
18988 3' -53 NC_004684.1 + 62327 0.68 0.806903
Target:  5'- aGGACCaGCCGcgcuaccCCGAUGUcgaGGUGGCGCu -3'
miRNA:   3'- -CCUGG-CGGUc------GGCUGCA---UUAUUGCGu -5'
18988 3' -53 NC_004684.1 + 62084 0.68 0.79735
Target:  5'- cGG-UCGCCAGCgCGucguCGUAGcUGGCGCu -3'
miRNA:   3'- -CCuGGCGGUCG-GCu---GCAUU-AUUGCGu -5'
18988 3' -53 NC_004684.1 + 61892 0.72 0.563358
Target:  5'- cGAcCCGCCuGCCGACGgggccgAGcUGGCGCGc -3'
miRNA:   3'- cCU-GGCGGuCGGCUGCa-----UU-AUUGCGU- -5'
18988 3' -53 NC_004684.1 + 61516 0.67 0.816274
Target:  5'- -uGCgCGCCAGCaguGACGUGcaGGCGCu -3'
miRNA:   3'- ccUG-GCGGUCGg--CUGCAUuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 61323 0.71 0.628752
Target:  5'- cGGGCCGCCGcccucGgCGGCGUAG-GugGCGg -3'
miRNA:   3'- -CCUGGCGGU-----CgGCUGCAUUaUugCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.