miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 8120 1.12 0.001585
Target:  5'- aGGACCGCCAGCCGACGUAAUAACGCAg -3'
miRNA:   3'- -CCUGGCGGUCGGCUGCAUUAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 45621 0.7 0.704988
Target:  5'- cGGugCGCCGGUCGAagaGgugGAUGA-GCAg -3'
miRNA:   3'- -CCugGCGGUCGGCUg--Ca--UUAUUgCGU- -5'
18988 3' -53 NC_004684.1 + 34371 0.7 0.704988
Target:  5'- cGGACaCGCCGcccuuGCUGACGguggccuGCGCAg -3'
miRNA:   3'- -CCUG-GCGGU-----CGGCUGCauuau--UGCGU- -5'
18988 3' -53 NC_004684.1 + 65189 0.66 0.897977
Target:  5'- cGGACgaCGCCAcccuGCuCGACGgcAUGaucaccGCGCAg -3'
miRNA:   3'- -CCUG--GCGGU----CG-GCUGCauUAU------UGCGU- -5'
18988 3' -53 NC_004684.1 + 1828 0.74 0.449556
Target:  5'- cGGACCGCCcucGGUgGugGUGAgguCGCGg -3'
miRNA:   3'- -CCUGGCGG---UCGgCugCAUUauuGCGU- -5'
18988 3' -53 NC_004684.1 + 11742 0.73 0.499908
Target:  5'- uGGCCGCCGuGCUGGCGUGGccGAUGCc -3'
miRNA:   3'- cCUGGCGGU-CGGCUGCAUUa-UUGCGu -5'
18988 3' -53 NC_004684.1 + 12656 0.73 0.520745
Target:  5'- -aGCCGCCugcGCCuGACGUGcgAGCGCc -3'
miRNA:   3'- ccUGGCGGu--CGG-CUGCAUuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 61892 0.72 0.563358
Target:  5'- cGAcCCGCCuGCCGACGgggccgAGcUGGCGCGc -3'
miRNA:   3'- cCU-GGCGGuCGGCUGCa-----UU-AUUGCGU- -5'
18988 3' -53 NC_004684.1 + 13126 0.71 0.595919
Target:  5'- cGGaaGCCGaCCGGCCcggcGACGUAAccgGGCGCGu -3'
miRNA:   3'- -CC--UGGC-GGUCGG----CUGCAUUa--UUGCGU- -5'
18988 3' -53 NC_004684.1 + 25401 0.7 0.703914
Target:  5'- -cGCCGCCagGGCCGACGaaccgccgccgccUGGUGugGCc -3'
miRNA:   3'- ccUGGCGG--UCGGCUGC-------------AUUAUugCGu -5'
18988 3' -53 NC_004684.1 + 43834 0.7 0.650671
Target:  5'- cGGuACCGUCAGCCGAgGcgcu-GCGCu -3'
miRNA:   3'- -CC-UGGCGGUCGGCUgCauuauUGCGu -5'
18988 3' -53 NC_004684.1 + 59511 0.71 0.595919
Target:  5'- aGGCCGCCAGgCGGcCGU----GCGCAa -3'
miRNA:   3'- cCUGGCGGUCgGCU-GCAuuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 1309 0.77 0.31738
Target:  5'- aGGCCGCCgaGGCCGACGaAGUcGACGCc -3'
miRNA:   3'- cCUGGCGG--UCGGCUGCaUUA-UUGCGu -5'
18988 3' -53 NC_004684.1 + 63591 0.7 0.672522
Target:  5'- aGGCCGCCcuGCUGGCGca--GGCGCAg -3'
miRNA:   3'- cCUGGCGGu-CGGCUGCauuaUUGCGU- -5'
18988 3' -53 NC_004684.1 + 22532 0.76 0.333201
Target:  5'- gGGAUCGCCGccgcGCCGACGgcGAUGGCGUu -3'
miRNA:   3'- -CCUGGCGGU----CGGCUGCa-UUAUUGCGu -5'
18988 3' -53 NC_004684.1 + 60436 0.72 0.574167
Target:  5'- uGGcACCGCUGGCCGAacgcgcgGUGAUcGCGCu -3'
miRNA:   3'- -CC-UGGCGGUCGGCUg------CAUUAuUGCGu -5'
18988 3' -53 NC_004684.1 + 54983 0.7 0.680139
Target:  5'- aGGGCCGCCucguGCCGcACGUuGUgcagggccacgaccGugGCAg -3'
miRNA:   3'- -CCUGGCGGu---CGGC-UGCAuUA--------------UugCGU- -5'
18988 3' -53 NC_004684.1 + 33575 0.7 0.704988
Target:  5'- aGGGCCGCC-GCCG-CGUccac-CGCAg -3'
miRNA:   3'- -CCUGGCGGuCGGCuGCAuuauuGCGU- -5'
18988 3' -53 NC_004684.1 + 4587 0.74 0.439822
Target:  5'- uGGCCGCCAGCuCGGCGggguuacGGUAGCGg- -3'
miRNA:   3'- cCUGGCGGUCG-GCUGCa------UUAUUGCgu -5'
18988 3' -53 NC_004684.1 + 21361 0.73 0.499908
Target:  5'- cGGGCgCGCguGCCGGgGUGGUugaccuGGCGCAc -3'
miRNA:   3'- -CCUG-GCGguCGGCUgCAUUA------UUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.