miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 24492 0.67 0.503926
Target:  5'- aCCGCCGGgGGCGGugcc-GCAGGg- -3'
miRNA:   3'- aGGUGGCCgCCGUCcuauaCGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 25296 0.67 0.493931
Target:  5'- gCCACaccaGGCGGCGGcGGUucgucgGCccuGGCGg -3'
miRNA:   3'- aGGUGg---CCGCCGUC-CUAua----CGu--CCGC- -5'
18989 3' -59.3 NC_004684.1 + 25781 0.7 0.309539
Target:  5'- cUCCACCGGCGGCAcgccGGUGUucgucaccaacugGcCGGGUGg -3'
miRNA:   3'- -AGGUGGCCGCCGUc---CUAUA-------------C-GUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 26411 0.66 0.55509
Target:  5'- gCCACCGGCGcGCuGGca--GCGGGg- -3'
miRNA:   3'- aGGUGGCCGC-CGuCCuauaCGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 26438 0.69 0.365332
Target:  5'- gCCGCCGGUGGCccg--GUGUAcGGCGg -3'
miRNA:   3'- aGGUGGCCGCCGuccuaUACGU-CCGC- -5'
18989 3' -59.3 NC_004684.1 + 26576 0.67 0.483043
Target:  5'- gCC-CUGGCGcGCGGcGGUGUGCGcggguucgccaccGGCGg -3'
miRNA:   3'- aGGuGGCCGC-CGUC-CUAUACGU-------------CCGC- -5'
18989 3' -59.3 NC_004684.1 + 27460 0.69 0.393527
Target:  5'- aCCACCGGCGGUgacaagcguauugAGGuccAUGCGccgauuacagugaacGGCGg -3'
miRNA:   3'- aGGUGGCCGCCG-------------UCCua-UACGU---------------CCGC- -5'
18989 3' -59.3 NC_004684.1 + 27873 0.69 0.364499
Target:  5'- aCCGCCGcGCaccgucgGGCGGGGUGUacaGCccGGGCGa -3'
miRNA:   3'- aGGUGGC-CG-------CCGUCCUAUA---CG--UCCGC- -5'
18989 3' -59.3 NC_004684.1 + 27977 0.67 0.503926
Target:  5'- cCCGagagugcggaguUCGGCGGCGucuGGGUgAUGCAGGuCGa -3'
miRNA:   3'- aGGU------------GGCCGCCGU---CCUA-UACGUCC-GC- -5'
18989 3' -59.3 NC_004684.1 + 28649 0.74 0.193169
Target:  5'- -aCACCGGUGGCGGGGUGuUGguGaccGCGa -3'
miRNA:   3'- agGUGGCCGCCGUCCUAU-ACguC---CGC- -5'
18989 3' -59.3 NC_004684.1 + 31089 0.73 0.208685
Target:  5'- gCCGCCgagGGCuGGCAGGAcgccgcGCAGGCGc -3'
miRNA:   3'- aGGUGG---CCG-CCGUCCUaua---CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 31653 0.71 0.288692
Target:  5'- cCCGCCGGgacgcUGGCAcugucGGcgGUGCGGGUGa -3'
miRNA:   3'- aGGUGGCC-----GCCGU-----CCuaUACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 31819 0.67 0.503926
Target:  5'- gCCGUCGGCGGCGGuGUGUcGCcaccGGCGa -3'
miRNA:   3'- aGGUGGCCGCCGUCcUAUA-CGu---CCGC- -5'
18989 3' -59.3 NC_004684.1 + 33124 0.66 0.55509
Target:  5'- -gCGCUugGGCgGGCGGGAUcAUGUuGGCGa -3'
miRNA:   3'- agGUGG--CCG-CCGUCCUA-UACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 33513 0.66 0.53441
Target:  5'- cUCGCgGGCGGUGGcGGcUAUGCGGGg- -3'
miRNA:   3'- aGGUGgCCGCCGUC-CU-AUACGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 33803 0.67 0.474221
Target:  5'- gUCAUCGaGCGGUucGGcGUcgGCGGGCGg -3'
miRNA:   3'- aGGUGGC-CGCCGu-CC-UAuaCGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 33878 0.69 0.348935
Target:  5'- cCUACCaGGCGGUgcGGGcgGUGCcGGUGg -3'
miRNA:   3'- aGGUGG-CCGCCG--UCCuaUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 37553 0.68 0.436036
Target:  5'- cCCGCCGGUGGacccgguguacCGGGAgcUGgAGGUGc -3'
miRNA:   3'- aGGUGGCCGCC-----------GUCCUauACgUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 37757 0.66 0.53441
Target:  5'- aUCCACCuGGCGcacCGGGucgAUGCcugaccGGGCGg -3'
miRNA:   3'- -AGGUGG-CCGCc--GUCCua-UACG------UCCGC- -5'
18989 3' -59.3 NC_004684.1 + 38029 0.69 0.373727
Target:  5'- cUCCACCGcGuCGaGCAGGGcGUGCAugcuGGUGa -3'
miRNA:   3'- -AGGUGGC-C-GC-CGUCCUaUACGU----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.