miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 12969 0.67 0.487978
Target:  5'- gCCgACCGGCGGCAGGcaacaccgagcGcCGGGCc -3'
miRNA:   3'- aGG-UGGCCGCCGUCCuaua-------C-GUCCGc -5'
18989 3' -59.3 NC_004684.1 + 13048 0.7 0.302949
Target:  5'- gCCGCCGcGuCGGCGGGAgcaccggggGUGCcgacGGCGg -3'
miRNA:   3'- aGGUGGC-C-GCCGUCCUa--------UACGu---CCGC- -5'
18989 3' -59.3 NC_004684.1 + 13361 0.68 0.400571
Target:  5'- gCCACCGGCGGCcaccagcgcGCuGGCGg -3'
miRNA:   3'- aGGUGGCCGCCGuccuaua--CGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 15932 0.66 0.56552
Target:  5'- -gCACCGGagccuGGCGGGGccuacaucggcAUGCAGGCc -3'
miRNA:   3'- agGUGGCCg----CCGUCCUa----------UACGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 18431 0.7 0.325339
Target:  5'- gCCGCCGGuCGGCuccGGGGgcgGCAccGGCGu -3'
miRNA:   3'- aGGUGGCC-GCCG---UCCUauaCGU--CCGC- -5'
18989 3' -59.3 NC_004684.1 + 18713 0.66 0.53441
Target:  5'- cUgACCGGUGGCAcgcucucgcuGGAUGUGgC-GGCGu -3'
miRNA:   3'- aGgUGGCCGCCGU----------CCUAUAC-GuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 19035 0.7 0.302949
Target:  5'- -gCACCGGCGGcCGGGcaggucaugaaGUGcgGCAGGCu -3'
miRNA:   3'- agGUGGCCGCC-GUCC-----------UAUa-CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 19354 0.71 0.274968
Target:  5'- cUCCGgcuCCGGCGGCAGGGcAUcgaaGCAGGa- -3'
miRNA:   3'- -AGGU---GGCCGCCGUCCUaUA----CGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 19410 0.69 0.357067
Target:  5'- gCCA-CGGCGGCGGcGUAUGC-GGCc -3'
miRNA:   3'- aGGUgGCCGCCGUCcUAUACGuCCGc -5'
18989 3' -59.3 NC_004684.1 + 19594 0.7 0.317741
Target:  5'- cCCAguCCGGCGGCc-GAgGUGCuGGCGg -3'
miRNA:   3'- aGGU--GGCCGCCGucCUaUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 19780 0.7 0.317741
Target:  5'- cCCGCCGGgGGCGacaaGAUG-GCGGGCc -3'
miRNA:   3'- aGGUGGCCgCCGUc---CUAUaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 20072 0.68 0.399686
Target:  5'- aCCACCGGUGccuGCuGGAgGUGguGGgGg -3'
miRNA:   3'- aGGUGGCCGC---CGuCCUaUACguCCgC- -5'
18989 3' -59.3 NC_004684.1 + 22273 0.66 0.540587
Target:  5'- aCCGCCuGGCGGCGGccaaggcccGCGcGGCGg -3'
miRNA:   3'- aGGUGG-CCGCCGUCcuaua----CGU-CCGC- -5'
18989 3' -59.3 NC_004684.1 + 22372 0.8 0.073113
Target:  5'- gUCgCGCUGGCGGU-GGAcGUGCAGGCGg -3'
miRNA:   3'- -AG-GUGGCCGCCGuCCUaUACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 22698 0.67 0.484028
Target:  5'- gCC-CCGGCGGCgcAGGAcGUGgccaAGGCc -3'
miRNA:   3'- aGGuGGCCGCCG--UCCUaUACg---UCCGc -5'
18989 3' -59.3 NC_004684.1 + 22818 0.69 0.382252
Target:  5'- gUCgACCGGCaGUucccGGcgGUGCAGGCc -3'
miRNA:   3'- -AGgUGGCCGcCGu---CCuaUACGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 23213 0.66 0.514008
Target:  5'- gCCGCCGGUGGCGacg---GCGGGUu -3'
miRNA:   3'- aGGUGGCCGCCGUccuauaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 23291 0.69 0.362838
Target:  5'- gCCACCGGCGGCcuuGGugaugucggucaGUAUcuugccgauguugaGCAGGCu -3'
miRNA:   3'- aGGUGGCCGCCGu--CC------------UAUA--------------CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 23674 0.76 0.12514
Target:  5'- aCCACCGGCGGCGGuGUucgcgcggcccgGCAGGCu -3'
miRNA:   3'- aGGUGGCCGCCGUCcUAua----------CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 24154 0.74 0.188226
Target:  5'- aCCGcuCCGGU-GCAGGGUccGCAGGCGg -3'
miRNA:   3'- aGGU--GGCCGcCGUCCUAuaCGUCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.