miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 19354 0.71 0.274968
Target:  5'- cUCCGgcuCCGGCGGCAGGGcAUcgaaGCAGGa- -3'
miRNA:   3'- -AGGU---GGCCGCCGUCCUaUA----CGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 9931 0.71 0.281764
Target:  5'- cUCACCGGCGGCGGuGAUcgacgGCAagacGGUGg -3'
miRNA:   3'- aGGUGGCCGCCGUC-CUAua---CGU----CCGC- -5'
18989 3' -59.3 NC_004684.1 + 31653 0.71 0.288692
Target:  5'- cCCGCCGGgacgcUGGCAcugucGGcgGUGCGGGUGa -3'
miRNA:   3'- aGGUGGCC-----GCCGU-----CCuaUACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 12962 0.71 0.288692
Target:  5'- cUCC-CCGGCGGCGGccUcgGCGguGGCGg -3'
miRNA:   3'- -AGGuGGCCGCCGUCcuAuaCGU--CCGC- -5'
18989 3' -59.3 NC_004684.1 + 4507 0.71 0.295753
Target:  5'- cCCGcgcguuguuCCGGCGGcCAGGAcuUGCuGGCGc -3'
miRNA:   3'- aGGU---------GGCCGCC-GUCCUauACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 51595 0.71 0.295753
Target:  5'- cCCGCCaGGCGGCGGuGAc---CGGGCGg -3'
miRNA:   3'- aGGUGG-CCGCCGUC-CUauacGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 49031 0.7 0.302949
Target:  5'- gCCACCGGC-GCAGGcuccuccuccUcgGCAGGCu -3'
miRNA:   3'- aGGUGGCCGcCGUCCu---------AuaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 13048 0.7 0.302949
Target:  5'- gCCGCCGcGuCGGCGGGAgcaccggggGUGCcgacGGCGg -3'
miRNA:   3'- aGGUGGC-C-GCCGUCCUa--------UACGu---CCGC- -5'
18989 3' -59.3 NC_004684.1 + 19035 0.7 0.302949
Target:  5'- -gCACCGGCGGcCGGGcaggucaugaaGUGcgGCAGGCu -3'
miRNA:   3'- agGUGGCCGCC-GUCC-----------UAUa-CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 25781 0.7 0.309539
Target:  5'- cUCCACCGGCGGCAcgccGGUGUucgucaccaacugGcCGGGUGg -3'
miRNA:   3'- -AGGUGGCCGCCGUc---CUAUA-------------C-GUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 19780 0.7 0.317741
Target:  5'- cCCGCCGGgGGCGacaaGAUG-GCGGGCc -3'
miRNA:   3'- aGGUGGCCgCCGUc---CUAUaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 19594 0.7 0.317741
Target:  5'- cCCAguCCGGCGGCc-GAgGUGCuGGCGg -3'
miRNA:   3'- aGGU--GGCCGCCGucCUaUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 59008 0.7 0.317741
Target:  5'- gUCC-CCGGaGGCGGGGUGggGCGGGg- -3'
miRNA:   3'- -AGGuGGCCgCCGUCCUAUa-CGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 18431 0.7 0.325339
Target:  5'- gCCGCCGGuCGGCuccGGGGgcgGCAccGGCGu -3'
miRNA:   3'- aGGUGGCC-GCCG---UCCUauaCGU--CCGC- -5'
18989 3' -59.3 NC_004684.1 + 33878 0.69 0.348935
Target:  5'- cCUACCaGGCGGUgcGGGcgGUGCcGGUGg -3'
miRNA:   3'- aGGUGG-CCGCCG--UCCuaUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 53782 0.69 0.354614
Target:  5'- gUCCcagACCGGCgcGGCgcuGGGAUcggguugcgccuccAUGCGGGCGu -3'
miRNA:   3'- -AGG---UGGCCG--CCG---UCCUA--------------UACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 19410 0.69 0.357067
Target:  5'- gCCA-CGGCGGCGGcGUAUGC-GGCc -3'
miRNA:   3'- aGGUgGCCGCCGUCcUAUACGuCCGc -5'
18989 3' -59.3 NC_004684.1 + 23291 0.69 0.362838
Target:  5'- gCCACCGGCGGCcuuGGugaugucggucaGUAUcuugccgauguugaGCAGGCu -3'
miRNA:   3'- aGGUGGCCGCCGu--CC------------UAUA--------------CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 27873 0.69 0.364499
Target:  5'- aCCGCCGcGCaccgucgGGCGGGGUGUacaGCccGGGCGa -3'
miRNA:   3'- aGGUGGC-CG-------CCGUCCUAUA---CG--UCCGC- -5'
18989 3' -59.3 NC_004684.1 + 57356 0.69 0.365332
Target:  5'- cCCGCCGGUgagGGCGGGGUcuuuUGCGcGGUu -3'
miRNA:   3'- aGGUGGCCG---CCGUCCUAu---ACGU-CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.