miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 62093 0.66 0.524171
Target:  5'- gUCC-CCGucgcgauugugcGCGGCGGG---UGCGGGUGg -3'
miRNA:   3'- -AGGuGGC------------CGCCGUCCuauACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 10476 0.66 0.524171
Target:  5'- -aCGCUGGCGGCcuGGUAcccgGCGGuGCGc -3'
miRNA:   3'- agGUGGCCGCCGucCUAUa---CGUC-CGC- -5'
18989 3' -59.3 NC_004684.1 + 8675 0.66 0.524171
Target:  5'- gCCACCGGCgcguucaugcucGGCAGGcucaucucGUGC-GGCa -3'
miRNA:   3'- aGGUGGCCG------------CCGUCCua------UACGuCCGc -5'
18989 3' -59.3 NC_004684.1 + 48352 0.66 0.514008
Target:  5'- aUCCACgGGCGGUcucGGAgugcuUGCcGGUGu -3'
miRNA:   3'- -AGGUGgCCGCCGu--CCUau---ACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 23213 0.66 0.514008
Target:  5'- gCCGCCGGUGGCGacg---GCGGGUu -3'
miRNA:   3'- aGGUGGCCGCCGUccuauaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 1955 0.66 0.514008
Target:  5'- aUCCuuCGGCcaGguGGAUAUGCGgcccGGCGu -3'
miRNA:   3'- -AGGugGCCGc-CguCCUAUACGU----CCGC- -5'
18989 3' -59.3 NC_004684.1 + 31819 0.67 0.503926
Target:  5'- gCCGUCGGCGGCGGuGUGUcGCcaccGGCGa -3'
miRNA:   3'- aGGUGGCCGCCGUCcUAUA-CGu---CCGC- -5'
18989 3' -59.3 NC_004684.1 + 27977 0.67 0.503926
Target:  5'- cCCGagagugcggaguUCGGCGGCGucuGGGUgAUGCAGGuCGa -3'
miRNA:   3'- aGGU------------GGCCGCCGU---CCUA-UACGUCC-GC- -5'
18989 3' -59.3 NC_004684.1 + 24492 0.67 0.503926
Target:  5'- aCCGCCGGgGGCGGugcc-GCAGGg- -3'
miRNA:   3'- aGGUGGCCgCCGUCcuauaCGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 59386 0.67 0.49692
Target:  5'- aCCGcCCGGCGGCAcagucgcugcacuUGCAGGUGu -3'
miRNA:   3'- aGGU-GGCCGCCGUccuau--------ACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 25296 0.67 0.493931
Target:  5'- gCCACaccaGGCGGCGGcGGUucgucgGCccuGGCGg -3'
miRNA:   3'- aGGUGg---CCGCCGUC-CUAua----CGu--CCGC- -5'
18989 3' -59.3 NC_004684.1 + 12969 0.67 0.487978
Target:  5'- gCCgACCGGCGGCAGGcaacaccgagcGcCGGGCc -3'
miRNA:   3'- aGG-UGGCCGCCGUCCuaua-------C-GUCCGc -5'
18989 3' -59.3 NC_004684.1 + 6963 0.67 0.487978
Target:  5'- gCCACCGGCaacGGCaacgccaagaagacgAGGugAUGCuGGCGa -3'
miRNA:   3'- aGGUGGCCG---CCG---------------UCCuaUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 55835 0.67 0.484028
Target:  5'- --uGCCGGUGaGCGGGuacugcGUGCAGuGCGa -3'
miRNA:   3'- aggUGGCCGC-CGUCCua----UACGUC-CGC- -5'
18989 3' -59.3 NC_004684.1 + 48731 0.67 0.484028
Target:  5'- cUUGCCGGUGGC--GAUGUGgCAGGCc -3'
miRNA:   3'- aGGUGGCCGCCGucCUAUAC-GUCCGc -5'
18989 3' -59.3 NC_004684.1 + 59858 0.67 0.484028
Target:  5'- gCCGCCacGGCGGcCAGGucgGUcCGGGCa -3'
miRNA:   3'- aGGUGG--CCGCC-GUCCua-UAcGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 9868 0.67 0.484028
Target:  5'- gCCGCCGGaucccgacgcCGcGCAGGA---GCAGGCc -3'
miRNA:   3'- aGGUGGCC----------GC-CGUCCUauaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 22698 0.67 0.484028
Target:  5'- gCC-CCGGCGGCgcAGGAcGUGgccaAGGCc -3'
miRNA:   3'- aGGuGGCCGCCG--UCCUaUACg---UCCGc -5'
18989 3' -59.3 NC_004684.1 + 26576 0.67 0.483043
Target:  5'- gCC-CUGGCGcGCGGcGGUGUGCGcggguucgccaccGGCGg -3'
miRNA:   3'- aGGuGGCCGC-CGUC-CUAUACGU-------------CCGC- -5'
18989 3' -59.3 NC_004684.1 + 33803 0.67 0.474221
Target:  5'- gUCAUCGaGCGGUucGGcGUcgGCGGGCGg -3'
miRNA:   3'- aGGUGGC-CGCCGu-CC-UAuaCGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.