miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 7999 0.67 0.474221
Target:  5'- cUCCACCGGCuGGCuGGcg--GCcaccaGGGCa -3'
miRNA:   3'- -AGGUGGCCG-CCGuCCuauaCG-----UCCGc -5'
18989 3' -59.3 NC_004684.1 + 43475 0.67 0.464514
Target:  5'- -gCGgCGGCaGCAGGugcgGCGGGCGc -3'
miRNA:   3'- agGUgGCCGcCGUCCuauaCGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 40730 0.67 0.464514
Target:  5'- aCCAgC-GCGGCGGGGgc-GguGGCGg -3'
miRNA:   3'- aGGUgGcCGCCGUCCUauaCguCCGC- -5'
18989 3' -59.3 NC_004684.1 + 58529 0.67 0.454912
Target:  5'- gCCGuuGGCGGCGgcguuGGAgAUGCGaGCGg -3'
miRNA:   3'- aGGUggCCGCCGU-----CCUaUACGUcCGC- -5'
18989 3' -59.3 NC_004684.1 + 45283 0.68 0.445418
Target:  5'- gCCGCUGgagcGCGGCGGGG--UGguGGCc -3'
miRNA:   3'- aGGUGGC----CGCCGUCCUauACguCCGc -5'
18989 3' -59.3 NC_004684.1 + 37553 0.68 0.436036
Target:  5'- cCCGCCGGUGGacccgguguacCGGGAgcUGgAGGUGc -3'
miRNA:   3'- aGGUGGCCGCC-----------GUCCUauACgUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 61169 0.68 0.42677
Target:  5'- gCCAcCCGGCcaggucGGCGGGGU-UGguGGCc -3'
miRNA:   3'- aGGU-GGCCG------CCGUCCUAuACguCCGc -5'
18989 3' -59.3 NC_004684.1 + 65473 0.68 0.417621
Target:  5'- aCCAggcCCGGCaGGCcGGGUccgGCAGGUGc -3'
miRNA:   3'- aGGU---GGCCG-CCGuCCUAua-CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 66177 0.68 0.417621
Target:  5'- aUCCAgCCGGUGGUGGug-GUGguGGCc -3'
miRNA:   3'- -AGGU-GGCCGCCGUCcuaUACguCCGc -5'
18989 3' -59.3 NC_004684.1 + 62790 0.68 0.417621
Target:  5'- gCCugCc-CGGCGGGGUugccggGCAGGCGg -3'
miRNA:   3'- aGGugGccGCCGUCCUAua----CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 61711 0.68 0.417621
Target:  5'- uUCgACUGGCccaaguGCGuGGUGUGCGGGCGg -3'
miRNA:   3'- -AGgUGGCCGc-----CGUcCUAUACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 64928 0.68 0.408592
Target:  5'- cCCAggUGGCGGCGGuGAgcgccugGCGGGCGg -3'
miRNA:   3'- aGGUg-GCCGCCGUC-CUaua----CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 61329 0.68 0.403234
Target:  5'- gCCGCCcucggcggcguagguGGCGGcCAGGugaaugGUGguGGCGu -3'
miRNA:   3'- aGGUGG---------------CCGCC-GUCCua----UACguCCGC- -5'
18989 3' -59.3 NC_004684.1 + 13361 0.68 0.400571
Target:  5'- gCCACCGGCGGCcaccagcgcGCuGGCGg -3'
miRNA:   3'- aGGUGGCCGCCGuccuaua--CGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 20072 0.68 0.399686
Target:  5'- aCCACCGGUGccuGCuGGAgGUGguGGgGg -3'
miRNA:   3'- aGGUGGCCGC---CGuCCUaUACguCCgC- -5'
18989 3' -59.3 NC_004684.1 + 27460 0.69 0.393527
Target:  5'- aCCACCGGCGGUgacaagcguauugAGGuccAUGCGccgauuacagugaacGGCGg -3'
miRNA:   3'- aGGUGGCCGCCG-------------UCCua-UACGU---------------CCGC- -5'
18989 3' -59.3 NC_004684.1 + 38396 0.69 0.390906
Target:  5'- gCUACCGGCGGCGuGGAgaccgAgaaccuggccgaUGCGGGgGu -3'
miRNA:   3'- aGGUGGCCGCCGU-CCUa----U------------ACGUCCgC- -5'
18989 3' -59.3 NC_004684.1 + 59624 0.69 0.390906
Target:  5'- -gCGCUGGCGGUgcAGGAccUGUgcGCAGGCc -3'
miRNA:   3'- agGUGGCCGCCG--UCCU--AUA--CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 22818 0.69 0.382252
Target:  5'- gUCgACCGGCaGUucccGGcgGUGCAGGCc -3'
miRNA:   3'- -AGgUGGCCGcCGu---CCuaUACGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 6782 0.69 0.382252
Target:  5'- gCCGaCGGUGGcCAGGucgaccUGUGCAGGCc -3'
miRNA:   3'- aGGUgGCCGCC-GUCCu-----AUACGUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.