miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 9036 1.08 0.000612
Target:  5'- cUCCACCGGCGGCAGGAUAUGCAGGCGc -3'
miRNA:   3'- -AGGUGGCCGCCGUCCUAUACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 22372 0.8 0.073113
Target:  5'- gUCgCGCUGGCGGU-GGAcGUGCAGGCGg -3'
miRNA:   3'- -AG-GUGGCCGCCGuCCUaUACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 57674 0.78 0.093758
Target:  5'- aCCACCGuCGGUAGGu--UGCGGGCGa -3'
miRNA:   3'- aGGUGGCcGCCGUCCuauACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 785 0.77 0.115697
Target:  5'- gUCCACCGGCGGCugaccucggggccgAGGAU---CAGGCGc -3'
miRNA:   3'- -AGGUGGCCGCCG--------------UCCUAuacGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 23674 0.76 0.12514
Target:  5'- aCCACCGGCGGCGGuGUucgcgcggcccgGCAGGCu -3'
miRNA:   3'- aGGUGGCCGCCGUCcUAua----------CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 42709 0.76 0.133491
Target:  5'- aCCGgCGGCGGCGGGGgagGUGcCGGGuCGa -3'
miRNA:   3'- aGGUgGCCGCCGUCCUa--UAC-GUCC-GC- -5'
18989 3' -59.3 NC_004684.1 + 54372 0.76 0.140463
Target:  5'- --uGCCGGgGGCGGGGUcgaggccAUGCGGGCa -3'
miRNA:   3'- aggUGGCCgCCGUCCUA-------UACGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 61808 0.75 0.14465
Target:  5'- cCCGUCGGCaGGCGGGucgccuUGCAGGCGg -3'
miRNA:   3'- aGGUGGCCG-CCGUCCuau---ACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 60173 0.74 0.187738
Target:  5'- cUCCACgcgcucccagacgCGGCcuGGCAGGAUGUGCugaucGGCGu -3'
miRNA:   3'- -AGGUG-------------GCCG--CCGUCCUAUACGu----CCGC- -5'
18989 3' -59.3 NC_004684.1 + 5775 0.74 0.188226
Target:  5'- cUCCACCGGCGuCAGGA--UGCcaccGGCGu -3'
miRNA:   3'- -AGGUGGCCGCcGUCCUauACGu---CCGC- -5'
18989 3' -59.3 NC_004684.1 + 24154 0.74 0.188226
Target:  5'- aCCGcuCCGGU-GCAGGGUccGCAGGCGg -3'
miRNA:   3'- aGGU--GGCCGcCGUCCUAuaCGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 28649 0.74 0.193169
Target:  5'- -aCACCGGUGGCGGGGUGuUGguGaccGCGa -3'
miRNA:   3'- agGUGGCCGCCGUCCUAU-ACguC---CGC- -5'
18989 3' -59.3 NC_004684.1 + 4708 0.74 0.193169
Target:  5'- cUCCugCGGCgGGCAGGugAUGaGCAGGUu -3'
miRNA:   3'- -AGGugGCCG-CCGUCC--UAUaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 31089 0.73 0.208685
Target:  5'- gCCGCCgagGGCuGGCAGGAcgccgcGCAGGCGc -3'
miRNA:   3'- aGGUGG---CCG-CCGUCCUaua---CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 63222 0.73 0.214091
Target:  5'- gCCACCGGCGGCucGu--UGCcGGGCGu -3'
miRNA:   3'- aGGUGGCCGCCGucCuauACG-UCCGC- -5'
18989 3' -59.3 NC_004684.1 + 55193 0.73 0.225264
Target:  5'- aCCGCUGGCGGCGGcGcuggAUGCcuacgAGGCGu -3'
miRNA:   3'- aGGUGGCCGCCGUC-Cua--UACG-----UCCGC- -5'
18989 3' -59.3 NC_004684.1 + 11602 0.72 0.231034
Target:  5'- cCCACCGaGCGuGcCGGGAgucccaGCAGGCGa -3'
miRNA:   3'- aGGUGGC-CGC-C-GUCCUaua---CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 52169 0.72 0.242947
Target:  5'- gUgGCCGGUGGCAuGGA---GCGGGCGu -3'
miRNA:   3'- aGgUGGCCGCCGU-CCUauaCGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 3803 0.72 0.242947
Target:  5'- gCCGCCuuGGCGGUcaAGGAUcUGCuGGGCGc -3'
miRNA:   3'- aGGUGG--CCGCCG--UCCUAuACG-UCCGC- -5'
18989 3' -59.3 NC_004684.1 + 48956 0.72 0.26177
Target:  5'- -aCGUCGGCgGGCGGGGUGgccgggGCGGGCGc -3'
miRNA:   3'- agGUGGCCG-CCGUCCUAUa-----CGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.