miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 785 0.77 0.115697
Target:  5'- gUCCACCGGCGGCugaccucggggccgAGGAU---CAGGCGc -3'
miRNA:   3'- -AGGUGGCCGCCG--------------UCCUAuacGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 1955 0.66 0.514008
Target:  5'- aUCCuuCGGCcaGguGGAUAUGCGgcccGGCGu -3'
miRNA:   3'- -AGGugGCCGc-CguCCUAUACGU----CCGC- -5'
18989 3' -59.3 NC_004684.1 + 2784 0.66 0.53441
Target:  5'- -gCACCGGCcaGGCcGGggAUGCGGuGCc -3'
miRNA:   3'- agGUGGCCG--CCGuCCuaUACGUC-CGc -5'
18989 3' -59.3 NC_004684.1 + 2957 0.66 0.53441
Target:  5'- gCCAUCGGCGcGCugcuguUGCGGGUGg -3'
miRNA:   3'- aGGUGGCCGC-CGuccuauACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 3803 0.72 0.242947
Target:  5'- gCCGCCuuGGCGGUcaAGGAUcUGCuGGGCGc -3'
miRNA:   3'- aGGUGG--CCGCCG--UCCUAuACG-UCCGC- -5'
18989 3' -59.3 NC_004684.1 + 4507 0.71 0.295753
Target:  5'- cCCGcgcguuguuCCGGCGGcCAGGAcuUGCuGGCGc -3'
miRNA:   3'- aGGU---------GGCCGCC-GUCCUauACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 4708 0.74 0.193169
Target:  5'- cUCCugCGGCgGGCAGGugAUGaGCAGGUu -3'
miRNA:   3'- -AGGugGCCG-CCGUCC--UAUaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 5775 0.74 0.188226
Target:  5'- cUCCACCGGCGuCAGGA--UGCcaccGGCGu -3'
miRNA:   3'- -AGGUGGCCGCcGUCCUauACGu---CCGC- -5'
18989 3' -59.3 NC_004684.1 + 6782 0.69 0.382252
Target:  5'- gCCGaCGGUGGcCAGGucgaccUGUGCAGGCc -3'
miRNA:   3'- aGGUgGCCGCC-GUCCu-----AUACGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 6963 0.67 0.487978
Target:  5'- gCCACCGGCaacGGCaacgccaagaagacgAGGugAUGCuGGCGa -3'
miRNA:   3'- aGGUGGCCG---CCG---------------UCCuaUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 7350 0.66 0.551972
Target:  5'- cCCGCCGGUGcGCGccguGGAgaacgcauccgagcUGUGCuGGUGg -3'
miRNA:   3'- aGGUGGCCGC-CGU----CCU--------------AUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 7999 0.67 0.474221
Target:  5'- cUCCACCGGCuGGCuGGcg--GCcaccaGGGCa -3'
miRNA:   3'- -AGGUGGCCG-CCGuCCuauaCG-----UCCGc -5'
18989 3' -59.3 NC_004684.1 + 8675 0.66 0.524171
Target:  5'- gCCACCGGCgcguucaugcucGGCAGGcucaucucGUGC-GGCa -3'
miRNA:   3'- aGGUGGCCG------------CCGUCCua------UACGuCCGc -5'
18989 3' -59.3 NC_004684.1 + 9036 1.08 0.000612
Target:  5'- cUCCACCGGCGGCAGGAUAUGCAGGCGc -3'
miRNA:   3'- -AGGUGGCCGCCGUCCUAUACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 9868 0.67 0.484028
Target:  5'- gCCGCCGGaucccgacgcCGcGCAGGA---GCAGGCc -3'
miRNA:   3'- aGGUGGCC----------GC-CGUCCUauaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 9931 0.71 0.281764
Target:  5'- cUCACCGGCGGCGGuGAUcgacgGCAagacGGUGg -3'
miRNA:   3'- aGGUGGCCGCCGUC-CUAua---CGU----CCGC- -5'
18989 3' -59.3 NC_004684.1 + 10476 0.66 0.524171
Target:  5'- -aCGCUGGCGGCcuGGUAcccgGCGGuGCGc -3'
miRNA:   3'- agGUGGCCGCCGucCUAUa---CGUC-CGC- -5'
18989 3' -59.3 NC_004684.1 + 11602 0.72 0.231034
Target:  5'- cCCACCGaGCGuGcCGGGAgucccaGCAGGCGa -3'
miRNA:   3'- aGGUGGC-CGC-C-GUCCUaua---CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 11880 0.66 0.56552
Target:  5'- -gCGCUGGCGGUgaacacaccGGGAUucaacGUGCGcGGCa -3'
miRNA:   3'- agGUGGCCGCCG---------UCCUA-----UACGU-CCGc -5'
18989 3' -59.3 NC_004684.1 + 12962 0.71 0.288692
Target:  5'- cUCC-CCGGCGGCGGccUcgGCGguGGCGg -3'
miRNA:   3'- -AGGuGGCCGCCGUCcuAuaCGU--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.