miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 66695 0.69 0.365332
Target:  5'- cCCAcCCGGCGGCGGucuUGcgcUGCGcGGCGa -3'
miRNA:   3'- aGGU-GGCCGCCGUCcu-AU---ACGU-CCGC- -5'
18989 3' -59.3 NC_004684.1 + 66177 0.68 0.417621
Target:  5'- aUCCAgCCGGUGGUGGug-GUGguGGCc -3'
miRNA:   3'- -AGGU-GGCCGCCGUCcuaUACguCCGc -5'
18989 3' -59.3 NC_004684.1 + 65473 0.68 0.417621
Target:  5'- aCCAggcCCGGCaGGCcGGGUccgGCAGGUGc -3'
miRNA:   3'- aGGU---GGCCG-CCGuCCUAua-CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 64928 0.68 0.408592
Target:  5'- cCCAggUGGCGGCGGuGAgcgccugGCGGGCGg -3'
miRNA:   3'- aGGUg-GCCGCCGUC-CUaua----CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 63222 0.73 0.214091
Target:  5'- gCCACCGGCGGCucGu--UGCcGGGCGu -3'
miRNA:   3'- aGGUGGCCGCCGucCuauACG-UCCGC- -5'
18989 3' -59.3 NC_004684.1 + 62790 0.68 0.417621
Target:  5'- gCCugCc-CGGCGGGGUugccggGCAGGCGg -3'
miRNA:   3'- aGGugGccGCCGUCCUAua----CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 62093 0.66 0.524171
Target:  5'- gUCC-CCGucgcgauugugcGCGGCGGG---UGCGGGUGg -3'
miRNA:   3'- -AGGuGGC------------CGCCGUCCuauACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 61808 0.75 0.14465
Target:  5'- cCCGUCGGCaGGCGGGucgccuUGCAGGCGg -3'
miRNA:   3'- aGGUGGCCG-CCGUCCuau---ACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 61711 0.68 0.417621
Target:  5'- uUCgACUGGCccaaguGCGuGGUGUGCGGGCGg -3'
miRNA:   3'- -AGgUGGCCGc-----CGUcCUAUACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 61329 0.68 0.403234
Target:  5'- gCCGCCcucggcggcguagguGGCGGcCAGGugaaugGUGguGGCGu -3'
miRNA:   3'- aGGUGG---------------CCGCC-GUCCua----UACguCCGC- -5'
18989 3' -59.3 NC_004684.1 + 61169 0.68 0.42677
Target:  5'- gCCAcCCGGCcaggucGGCGGGGU-UGguGGCc -3'
miRNA:   3'- aGGU-GGCCG------CCGUCCUAuACguCCGc -5'
18989 3' -59.3 NC_004684.1 + 60173 0.74 0.187738
Target:  5'- cUCCACgcgcucccagacgCGGCcuGGCAGGAUGUGCugaucGGCGu -3'
miRNA:   3'- -AGGUG-------------GCCG--CCGUCCUAUACGu----CCGC- -5'
18989 3' -59.3 NC_004684.1 + 59858 0.67 0.484028
Target:  5'- gCCGCCacGGCGGcCAGGucgGUcCGGGCa -3'
miRNA:   3'- aGGUGG--CCGCC-GUCCua-UAcGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 59704 0.69 0.372881
Target:  5'- cCCACCguggucgagcauuGGUGcGCGGGAUGUGacCGGGUGg -3'
miRNA:   3'- aGGUGG-------------CCGC-CGUCCUAUAC--GUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 59624 0.69 0.390906
Target:  5'- -gCGCUGGCGGUgcAGGAccUGUgcGCAGGCc -3'
miRNA:   3'- agGUGGCCGCCG--UCCU--AUA--CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 59448 0.66 0.53441
Target:  5'- cCCACCGGUGuGCGccGGUcgGC-GGCGa -3'
miRNA:   3'- aGGUGGCCGC-CGUc-CUAuaCGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 59386 0.67 0.49692
Target:  5'- aCCGcCCGGCGGCAcagucgcugcacuUGCAGGUGu -3'
miRNA:   3'- aGGU-GGCCGCCGUccuau--------ACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 59008 0.7 0.317741
Target:  5'- gUCC-CCGGaGGCGGGGUGggGCGGGg- -3'
miRNA:   3'- -AGGuGGCCgCCGUCCUAUa-CGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 58529 0.67 0.454912
Target:  5'- gCCGuuGGCGGCGgcguuGGAgAUGCGaGCGg -3'
miRNA:   3'- aGGUggCCGCCGU-----CCUaUACGUcCGC- -5'
18989 3' -59.3 NC_004684.1 + 57674 0.78 0.093758
Target:  5'- aCCACCGuCGGUAGGu--UGCGGGCGa -3'
miRNA:   3'- aGGUGGCcGCCGUCCuauACGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.