Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18989 | 3' | -59.3 | NC_004684.1 | + | 57356 | 0.69 | 0.365332 |
Target: 5'- cCCGCCGGUgagGGCGGGGUcuuuUGCGcGGUu -3' miRNA: 3'- aGGUGGCCG---CCGUCCUAu---ACGU-CCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 19035 | 0.7 | 0.302949 |
Target: 5'- -gCACCGGCGGcCGGGcaggucaugaaGUGcgGCAGGCu -3' miRNA: 3'- agGUGGCCGCC-GUCC-----------UAUa-CGUCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 25781 | 0.7 | 0.309539 |
Target: 5'- cUCCACCGGCGGCAcgccGGUGUucgucaccaacugGcCGGGUGg -3' miRNA: 3'- -AGGUGGCCGCCGUc---CUAUA-------------C-GUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 19594 | 0.7 | 0.317741 |
Target: 5'- cCCAguCCGGCGGCc-GAgGUGCuGGCGg -3' miRNA: 3'- aGGU--GGCCGCCGucCUaUACGuCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 19780 | 0.7 | 0.317741 |
Target: 5'- cCCGCCGGgGGCGacaaGAUG-GCGGGCc -3' miRNA: 3'- aGGUGGCCgCCGUc---CUAUaCGUCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 33878 | 0.69 | 0.348935 |
Target: 5'- cCUACCaGGCGGUgcGGGcgGUGCcGGUGg -3' miRNA: 3'- aGGUGG-CCGCCG--UCCuaUACGuCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 53782 | 0.69 | 0.354614 |
Target: 5'- gUCCcagACCGGCgcGGCgcuGGGAUcggguugcgccuccAUGCGGGCGu -3' miRNA: 3'- -AGG---UGGCCG--CCG---UCCUA--------------UACGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 26438 | 0.69 | 0.365332 |
Target: 5'- gCCGCCGGUGGCccg--GUGUAcGGCGg -3' miRNA: 3'- aGGUGGCCGCCGuccuaUACGU-CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 66695 | 0.69 | 0.365332 |
Target: 5'- cCCAcCCGGCGGCGGucuUGcgcUGCGcGGCGa -3' miRNA: 3'- aGGU-GGCCGCCGUCcu-AU---ACGU-CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 49031 | 0.7 | 0.302949 |
Target: 5'- gCCACCGGC-GCAGGcuccuccuccUcgGCAGGCu -3' miRNA: 3'- aGGUGGCCGcCGUCCu---------AuaCGUCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 31653 | 0.71 | 0.288692 |
Target: 5'- cCCGCCGGgacgcUGGCAcugucGGcgGUGCGGGUGa -3' miRNA: 3'- aGGUGGCC-----GCCGU-----CCuaUACGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 48956 | 0.72 | 0.26177 |
Target: 5'- -aCGUCGGCgGGCGGGGUGgccgggGCGGGCGc -3' miRNA: 3'- agGUGGCCG-CCGUCCUAUa-----CGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 54372 | 0.76 | 0.140463 |
Target: 5'- --uGCCGGgGGCGGGGUcgaggccAUGCGGGCa -3' miRNA: 3'- aggUGGCCgCCGUCCUA-------UACGUCCGc -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 61808 | 0.75 | 0.14465 |
Target: 5'- cCCGUCGGCaGGCGGGucgccuUGCAGGCGg -3' miRNA: 3'- aGGUGGCCG-CCGUCCuau---ACGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 60173 | 0.74 | 0.187738 |
Target: 5'- cUCCACgcgcucccagacgCGGCcuGGCAGGAUGUGCugaucGGCGu -3' miRNA: 3'- -AGGUG-------------GCCG--CCGUCCUAUACGu----CCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 24154 | 0.74 | 0.188226 |
Target: 5'- aCCGcuCCGGU-GCAGGGUccGCAGGCGg -3' miRNA: 3'- aGGU--GGCCGcCGUCCUAuaCGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 31089 | 0.73 | 0.208685 |
Target: 5'- gCCGCCgagGGCuGGCAGGAcgccgcGCAGGCGc -3' miRNA: 3'- aGGUGG---CCG-CCGUCCUaua---CGUCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 63222 | 0.73 | 0.214091 |
Target: 5'- gCCACCGGCGGCucGu--UGCcGGGCGu -3' miRNA: 3'- aGGUGGCCGCCGucCuauACG-UCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 55193 | 0.73 | 0.225264 |
Target: 5'- aCCGCUGGCGGCGGcGcuggAUGCcuacgAGGCGu -3' miRNA: 3'- aGGUGGCCGCCGUC-Cua--UACG-----UCCGC- -5' |
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18989 | 3' | -59.3 | NC_004684.1 | + | 3803 | 0.72 | 0.242947 |
Target: 5'- gCCGCCuuGGCGGUcaAGGAUcUGCuGGGCGc -3' miRNA: 3'- aGGUGG--CCGCCG--UCCUAuACG-UCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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