miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 9036 1.08 0.000612
Target:  5'- cUCCACCGGCGGCAGGAUAUGCAGGCGc -3'
miRNA:   3'- -AGGUGGCCGCCGUCCUAUACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 18431 0.7 0.325339
Target:  5'- gCCGCCGGuCGGCuccGGGGgcgGCAccGGCGu -3'
miRNA:   3'- aGGUGGCC-GCCG---UCCUauaCGU--CCGC- -5'
18989 3' -59.3 NC_004684.1 + 23291 0.69 0.362838
Target:  5'- gCCACCGGCGGCcuuGGugaugucggucaGUAUcuugccgauguugaGCAGGCu -3'
miRNA:   3'- aGGUGGCCGCCGu--CC------------UAUA--------------CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 33124 0.66 0.55509
Target:  5'- -gCGCUugGGCgGGCGGGAUcAUGUuGGCGa -3'
miRNA:   3'- agGUGG--CCG-CCGUCCUA-UACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 42709 0.76 0.133491
Target:  5'- aCCGgCGGCGGCGGGGgagGUGcCGGGuCGa -3'
miRNA:   3'- aGGUgGCCGCCGUCCUa--UAC-GUCC-GC- -5'
18989 3' -59.3 NC_004684.1 + 5775 0.74 0.188226
Target:  5'- cUCCACCGGCGuCAGGA--UGCcaccGGCGu -3'
miRNA:   3'- -AGGUGGCCGCcGUCCUauACGu---CCGC- -5'
18989 3' -59.3 NC_004684.1 + 28649 0.74 0.193169
Target:  5'- -aCACCGGUGGCGGGGUGuUGguGaccGCGa -3'
miRNA:   3'- agGUGGCCGCCGUCCUAU-ACguC---CGC- -5'
18989 3' -59.3 NC_004684.1 + 11602 0.72 0.231034
Target:  5'- cCCACCGaGCGuGcCGGGAgucccaGCAGGCGa -3'
miRNA:   3'- aGGUGGC-CGC-C-GUCCUaua---CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 9931 0.71 0.281764
Target:  5'- cUCACCGGCGGCGGuGAUcgacgGCAagacGGUGg -3'
miRNA:   3'- aGGUGGCCGCCGUC-CUAua---CGU----CCGC- -5'
18989 3' -59.3 NC_004684.1 + 59008 0.7 0.317741
Target:  5'- gUCC-CCGGaGGCGGGGUGggGCGGGg- -3'
miRNA:   3'- -AGGuGGCCgCCGUCCUAUa-CGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 51595 0.71 0.295753
Target:  5'- cCCGCCaGGCGGCGGuGAc---CGGGCGg -3'
miRNA:   3'- aGGUGG-CCGCCGUC-CUauacGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 19354 0.71 0.274968
Target:  5'- cUCCGgcuCCGGCGGCAGGGcAUcgaaGCAGGa- -3'
miRNA:   3'- -AGGU---GGCCGCCGUCCUaUA----CGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 57674 0.78 0.093758
Target:  5'- aCCACCGuCGGUAGGu--UGCGGGCGa -3'
miRNA:   3'- aGGUGGCcGCCGUCCuauACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 4507 0.71 0.295753
Target:  5'- cCCGcgcguuguuCCGGCGGcCAGGAcuUGCuGGCGc -3'
miRNA:   3'- aGGU---------GGCCGCC-GUCCUauACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 785 0.77 0.115697
Target:  5'- gUCCACCGGCGGCugaccucggggccgAGGAU---CAGGCGc -3'
miRNA:   3'- -AGGUGGCCGCCG--------------UCCUAuacGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 52169 0.72 0.242947
Target:  5'- gUgGCCGGUGGCAuGGA---GCGGGCGu -3'
miRNA:   3'- aGgUGGCCGCCGU-CCUauaCGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 13048 0.7 0.302949
Target:  5'- gCCGCCGcGuCGGCGGGAgcaccggggGUGCcgacGGCGg -3'
miRNA:   3'- aGGUGGC-C-GCCGUCCUa--------UACGu---CCGC- -5'
18989 3' -59.3 NC_004684.1 + 19410 0.69 0.357067
Target:  5'- gCCA-CGGCGGCGGcGUAUGC-GGCc -3'
miRNA:   3'- aGGUgGCCGCCGUCcUAUACGuCCGc -5'
18989 3' -59.3 NC_004684.1 + 23674 0.76 0.12514
Target:  5'- aCCACCGGCGGCGGuGUucgcgcggcccgGCAGGCu -3'
miRNA:   3'- aGGUGGCCGCCGUCcUAua----------CGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 4708 0.74 0.193169
Target:  5'- cUCCugCGGCgGGCAGGugAUGaGCAGGUu -3'
miRNA:   3'- -AGGugGCCG-CCGUCC--UAUaCGUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.