miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18990 3' -57.5 NC_004684.1 + 10187 1.12 0.000477
Target:  5'- gCUUGUCGCCGGUGUGGCUGAGCACCCg -3'
miRNA:   3'- -GAACAGCGGCCACACCGACUCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 47325 0.8 0.092886
Target:  5'- -gUGUCGCCGGUGUgGGCgucGAGCAUggCCa -3'
miRNA:   3'- gaACAGCGGCCACA-CCGa--CUCGUG--GG- -5'
18990 3' -57.5 NC_004684.1 + 48371 0.75 0.197492
Target:  5'- -gUGcUUGCCGGUGUGGUgcacgaucAGCACCCc -3'
miRNA:   3'- gaAC-AGCGGCCACACCGac------UCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 17796 0.75 0.213421
Target:  5'- -cUGUCGCCGGaaaugaagGcGGCUGAGCAgCUg -3'
miRNA:   3'- gaACAGCGGCCa-------CaCCGACUCGUgGG- -5'
18990 3' -57.5 NC_004684.1 + 64038 0.74 0.22293
Target:  5'- -gUGUCGgCGGUGUcGGCcucgaacaccucguUGAGCGCCUu -3'
miRNA:   3'- gaACAGCgGCCACA-CCG--------------ACUCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 40296 0.73 0.288423
Target:  5'- --cGUCGuuGGUGUcgauGGCguAGCGCCCg -3'
miRNA:   3'- gaaCAGCggCCACA----CCGacUCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 2509 0.71 0.382645
Target:  5'- cCUUGUCGCCGGUcUGGaacGGUGCCa -3'
miRNA:   3'- -GAACAGCGGCCAcACCgacUCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 27545 0.7 0.427514
Target:  5'- gCUUGUCaccGCCGGUgGUGGCaccGCGCuCCa -3'
miRNA:   3'- -GAACAG---CGGCCA-CACCGacuCGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 66774 0.7 0.427514
Target:  5'- --cGcCGCCGG-GUGGgaagacCUGGGCACCg -3'
miRNA:   3'- gaaCaGCGGCCaCACC------GACUCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 8453 0.69 0.446313
Target:  5'- gCUUGUCGCCGGUG-GGCa----GCUCg -3'
miRNA:   3'- -GAACAGCGGCCACaCCGacucgUGGG- -5'
18990 3' -57.5 NC_004684.1 + 2828 0.69 0.446313
Target:  5'- -cUG-CGCgGGUG-GGUggaUGAGCACCUg -3'
miRNA:   3'- gaACaGCGgCCACaCCG---ACUCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 7572 0.69 0.465565
Target:  5'- -gUGgCGCUGGUGcGGCUGgugcgcGGCaACCCg -3'
miRNA:   3'- gaACaGCGGCCACaCCGAC------UCG-UGGG- -5'
18990 3' -57.5 NC_004684.1 + 41447 0.69 0.475351
Target:  5'- -gUGcCGCCGGUGUcaguggGGCUGA-C-CCCg -3'
miRNA:   3'- gaACaGCGGCCACA------CCGACUcGuGGG- -5'
18990 3' -57.5 NC_004684.1 + 59412 0.69 0.475351
Target:  5'- --cGUgGCCGa-GUGGCcaaucgagGAGCGCCCg -3'
miRNA:   3'- gaaCAgCGGCcaCACCGa-------CUCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 26019 0.69 0.485239
Target:  5'- cCUUGUUGCCGaUGUucGGCgaGAGCGCgCu -3'
miRNA:   3'- -GAACAGCGGCcACA--CCGa-CUCGUGgG- -5'
18990 3' -57.5 NC_004684.1 + 15926 0.69 0.485239
Target:  5'- --cGUgCGUCGGUGUGGCgaugccGCGCgCCa -3'
miRNA:   3'- gaaCA-GCGGCCACACCGacu---CGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 27262 0.69 0.485239
Target:  5'- -cUGUCGgcguucggcaCGGUGaccgGGCUGAucaGCACCCu -3'
miRNA:   3'- gaACAGCg---------GCCACa---CCGACU---CGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 13279 0.69 0.485239
Target:  5'- --gGUgGCCGccgGUGGCUGGuGCGCgCCg -3'
miRNA:   3'- gaaCAgCGGCca-CACCGACU-CGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 16880 0.69 0.495224
Target:  5'- -cUG-CGCCGGUGUGGUgcaGAguuucaagcGCACaCCg -3'
miRNA:   3'- gaACaGCGGCCACACCGa--CU---------CGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 9239 0.68 0.536033
Target:  5'- -gUGUCGUCGGccaGGCcGAGCAUCUu -3'
miRNA:   3'- gaACAGCGGCCacaCCGaCUCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.