miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18990 3' -57.5 NC_004684.1 + 706 0.67 0.588556
Target:  5'- --aGcCGCCGGUGgacGGCcuGGCGCuCCa -3'
miRNA:   3'- gaaCaGCGGCCACa--CCGacUCGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 815 0.67 0.599194
Target:  5'- -gUGUCGUCGGgGUaGUUgGAGCGCCa -3'
miRNA:   3'- gaACAGCGGCCaCAcCGA-CUCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 1574 0.67 0.599194
Target:  5'- -aUGgugCGCCuGUcUGcGCUGAGCGCCa -3'
miRNA:   3'- gaACa--GCGGcCAcAC-CGACUCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 2509 0.71 0.382645
Target:  5'- cCUUGUCGCCGGUcUGGaacGGUGCCa -3'
miRNA:   3'- -GAACAGCGGCCAcACCgacUCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 2828 0.69 0.446313
Target:  5'- -cUG-CGCgGGUG-GGUggaUGAGCACCUg -3'
miRNA:   3'- gaACaGCGgCCACaCCG---ACUCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 4898 0.66 0.673919
Target:  5'- gCUUGUccucgaucugcgCGCCGGUcaUGGCgucGcGCACCCc -3'
miRNA:   3'- -GAACA------------GCGGCCAc-ACCGa--CuCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 5695 0.66 0.631234
Target:  5'- -cUGaCGCCGGUG-GaGCaGcGCGCCCu -3'
miRNA:   3'- gaACaGCGGCCACaC-CGaCuCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 5959 0.67 0.567391
Target:  5'- -cUGgccgCGCCGGUGagcgaccGGCcGAGCAaguCCCg -3'
miRNA:   3'- gaACa---GCGGCCACa------CCGaCUCGU---GGG- -5'
18990 3' -57.5 NC_004684.1 + 7572 0.69 0.465565
Target:  5'- -gUGgCGCUGGUGcGGCUGgugcgcGGCaACCCg -3'
miRNA:   3'- gaACaGCGGCCACaCCGAC------UCG-UGGG- -5'
18990 3' -57.5 NC_004684.1 + 7709 0.66 0.673919
Target:  5'- --cGUCGCCGuGgcgcUGGCcgUGAGcCACCUg -3'
miRNA:   3'- gaaCAGCGGC-Cac--ACCG--ACUC-GUGGG- -5'
18990 3' -57.5 NC_004684.1 + 8453 0.69 0.446313
Target:  5'- gCUUGUCGCCGGUG-GGCa----GCUCg -3'
miRNA:   3'- -GAACAGCGGCCACaCCGacucgUGGG- -5'
18990 3' -57.5 NC_004684.1 + 9239 0.68 0.536033
Target:  5'- -gUGUCGUCGGccaGGCcGAGCAUCUu -3'
miRNA:   3'- gaACAGCGGCCacaCCGaCUCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 10187 1.12 0.000477
Target:  5'- gCUUGUCGCCGGUGUGGCUGAGCACCCg -3'
miRNA:   3'- -GAACAGCGGCCACACCGACUCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 10861 0.68 0.546425
Target:  5'- --cGUCGCgGGUGUcGC-GGGCACgCa -3'
miRNA:   3'- gaaCAGCGgCCACAcCGaCUCGUGgG- -5'
18990 3' -57.5 NC_004684.1 + 11910 0.66 0.652612
Target:  5'- --aGUCGCCGGacaGcGGCgcgcucGCGCCCu -3'
miRNA:   3'- gaaCAGCGGCCa--CaCCGacu---CGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 13279 0.69 0.485239
Target:  5'- --gGUgGCCGccgGUGGCUGGuGCGCgCCg -3'
miRNA:   3'- gaaCAgCGGCca-CACCGACU-CGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 14505 0.67 0.567391
Target:  5'- --gGUCGCCGGUGgcacGGUgacGGUgACCCu -3'
miRNA:   3'- gaaCAGCGGCCACa---CCGac-UCG-UGGG- -5'
18990 3' -57.5 NC_004684.1 + 15926 0.69 0.485239
Target:  5'- --cGUgCGUCGGUGUGGCgaugccGCGCgCCa -3'
miRNA:   3'- gaaCA-GCGGCCACACCGacu---CGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 16880 0.69 0.495224
Target:  5'- -cUG-CGCCGGUGUGGUgcaGAguuucaagcGCACaCCg -3'
miRNA:   3'- gaACaGCGGCCACACCGa--CU---------CGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 17608 0.67 0.588556
Target:  5'- --cGUCGuCCGGcGUGGCaccGCGCUCg -3'
miRNA:   3'- gaaCAGC-GGCCaCACCGacuCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.