Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18990 | 3' | -57.5 | NC_004684.1 | + | 66774 | 0.7 | 0.427514 |
Target: 5'- --cGcCGCCGG-GUGGgaagacCUGGGCACCg -3' miRNA: 3'- gaaCaGCGGCCaCACC------GACUCGUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 64038 | 0.74 | 0.22293 |
Target: 5'- -gUGUCGgCGGUGUcGGCcucgaacaccucguUGAGCGCCUu -3' miRNA: 3'- gaACAGCgGCCACA-CCG--------------ACUCGUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 61323 | 0.66 | 0.663279 |
Target: 5'- -cUGUUcaaugGCgaGGUGUGGCUGAuCGCCg -3' miRNA: 3'- gaACAG-----CGg-CCACACCGACUcGUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 61246 | 0.67 | 0.567391 |
Target: 5'- -----gGCCGG-GUGGCUGAccgaguaCACCCa -3' miRNA: 3'- gaacagCGGCCaCACCGACUc------GUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 59412 | 0.69 | 0.475351 |
Target: 5'- --cGUgGCCGa-GUGGCcaaucgagGAGCGCCCg -3' miRNA: 3'- gaaCAgCGGCcaCACCGa-------CUCGUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 58394 | 0.66 | 0.620542 |
Target: 5'- --cGUCGCCGGUGa-GCUGucauCACCa -3' miRNA: 3'- gaaCAGCGGCCACacCGACuc--GUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 57712 | 0.67 | 0.567391 |
Target: 5'- --gGUCaCCGG-GUGGCUGGccGUACCg -3' miRNA: 3'- gaaCAGcGGCCaCACCGACU--CGUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 57308 | 0.66 | 0.631234 |
Target: 5'- uUUGU--CCGGca-GGCUGAGCACCa -3' miRNA: 3'- gAACAgcGGCCacaCCGACUCGUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 55795 | 0.67 | 0.567391 |
Target: 5'- --cGUCGCCGGauacGGCUGucGCGCUg -3' miRNA: 3'- gaaCAGCGGCCaca-CCGACu-CGUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 53546 | 0.66 | 0.663279 |
Target: 5'- --cGUUGCCGGUGcUGacacucGCgGGGgGCCCu -3' miRNA: 3'- gaaCAGCGGCCAC-AC------CGaCUCgUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 53534 | 0.66 | 0.673919 |
Target: 5'- -gUGUCGUCGGUGcGGC---GUGCCUg -3' miRNA: 3'- gaACAGCGGCCACaCCGacuCGUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 53314 | 0.67 | 0.577953 |
Target: 5'- --cGU-GCCacguGGUG-GuGCUGGGCACCCu -3' miRNA: 3'- gaaCAgCGG----CCACaC-CGACUCGUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 52721 | 0.67 | 0.599194 |
Target: 5'- ----aUGCCGGUGaUGGC-GAcGUGCCCg -3' miRNA: 3'- gaacaGCGGCCAC-ACCGaCU-CGUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 51153 | 0.66 | 0.663279 |
Target: 5'- --cGcCGCCgacuccucGGUGUGGCcGAuGCGCCg -3' miRNA: 3'- gaaCaGCGG--------CCACACCGaCU-CGUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 49611 | 0.66 | 0.663279 |
Target: 5'- --cGUCguugcggcugGCCGGUGUccagcccagcGGCUccagGAGCACCg -3' miRNA: 3'- gaaCAG----------CGGCCACA----------CCGA----CUCGUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 48957 | 0.66 | 0.673919 |
Target: 5'- --cGUCGgCGGgcgggGUGGCcgGGGCgggcgcgucgguGCCCu -3' miRNA: 3'- gaaCAGCgGCCa----CACCGa-CUCG------------UGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 48371 | 0.75 | 0.197492 |
Target: 5'- -gUGcUUGCCGGUGUGGUgcacgaucAGCACCCc -3' miRNA: 3'- gaAC-AGCGGCCACACCGac------UCGUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 47686 | 0.66 | 0.652612 |
Target: 5'- uCUUGUCGaaGGUGaugcUGGUUGgcgcGGUugCCa -3' miRNA: 3'- -GAACAGCggCCAC----ACCGAC----UCGugGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 47325 | 0.8 | 0.092886 |
Target: 5'- -gUGUCGCCGGUGUgGGCgucGAGCAUggCCa -3' miRNA: 3'- gaACAGCGGCCACA-CCGa--CUCGUG--GG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 43758 | 0.66 | 0.652612 |
Target: 5'- --cGaCGCCGuGUG-GGCUGAGUuCCa -3' miRNA: 3'- gaaCaGCGGC-CACaCCGACUCGuGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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