Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18990 | 3' | -57.5 | NC_004684.1 | + | 17796 | 0.75 | 0.213421 |
Target: 5'- -cUGUCGCCGGaaaugaagGcGGCUGAGCAgCUg -3' miRNA: 3'- gaACAGCGGCCa-------CaCCGACUCGUgGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 19015 | 0.68 | 0.556879 |
Target: 5'- --gGUCGCUGGUcuccgGGUUG-GCACCg -3' miRNA: 3'- gaaCAGCGGCCAca---CCGACuCGUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 25378 | 0.67 | 0.588556 |
Target: 5'- --cGcCGCCuGGUGUGGCcgGAagGCCCu -3' miRNA: 3'- gaaCaGCGG-CCACACCGa-CUcgUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 26019 | 0.69 | 0.485239 |
Target: 5'- cCUUGUUGCCGaUGUucGGCgaGAGCGCgCu -3' miRNA: 3'- -GAACAGCGGCcACA--CCGa-CUCGUGgG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 26454 | 0.66 | 0.649408 |
Target: 5'- --cGUUGCCGGUgccguugcccgacgGaaUGGCcGAGCGCaCCg -3' miRNA: 3'- gaaCAGCGGCCA--------------C--ACCGaCUCGUG-GG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 26839 | 0.67 | 0.588556 |
Target: 5'- --cG-CGCUGGUGgaccGGUcGAGCACCa -3' miRNA: 3'- gaaCaGCGGCCACa---CCGaCUCGUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 27262 | 0.69 | 0.485239 |
Target: 5'- -cUGUCGgcguucggcaCGGUGaccgGGCUGAucaGCACCCu -3' miRNA: 3'- gaACAGCg---------GCCACa---CCGACU---CGUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 27545 | 0.7 | 0.427514 |
Target: 5'- gCUUGUCaccGCCGGUgGUGGCaccGCGCuCCa -3' miRNA: 3'- -GAACAG---CGGCCA-CACCGacuCGUG-GG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 28071 | 0.67 | 0.577953 |
Target: 5'- ----cCGgCGGUGUGGCcGGGCcgccgcgcgACCCg -3' miRNA: 3'- gaacaGCgGCCACACCGaCUCG---------UGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 39035 | 0.68 | 0.556879 |
Target: 5'- gCUUGgUGCCGGUGaUGgagucGCUG-GCACCUu -3' miRNA: 3'- -GAACaGCGGCCAC-AC-----CGACuCGUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 40296 | 0.73 | 0.288423 |
Target: 5'- --cGUCGuuGGUGUcgauGGCguAGCGCCCg -3' miRNA: 3'- gaaCAGCggCCACA----CCGacUCGUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 41447 | 0.69 | 0.475351 |
Target: 5'- -gUGcCGCCGGUGUcaguggGGCUGA-C-CCCg -3' miRNA: 3'- gaACaGCGGCCACA------CCGACUcGuGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 42634 | 0.66 | 0.631234 |
Target: 5'- --cGcCGCCGGUGcUGGUgccgccagcgaUGAGCGCg- -3' miRNA: 3'- gaaCaGCGGCCAC-ACCG-----------ACUCGUGgg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 43758 | 0.66 | 0.652612 |
Target: 5'- --cGaCGCCGuGUG-GGCUGAGUuCCa -3' miRNA: 3'- gaaCaGCGGC-CACaCCGACUCGuGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 47325 | 0.8 | 0.092886 |
Target: 5'- -gUGUCGCCGGUGUgGGCgucGAGCAUggCCa -3' miRNA: 3'- gaACAGCGGCCACA-CCGa--CUCGUG--GG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 47686 | 0.66 | 0.652612 |
Target: 5'- uCUUGUCGaaGGUGaugcUGGUUGgcgcGGUugCCa -3' miRNA: 3'- -GAACAGCggCCAC----ACCGAC----UCGugGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 48371 | 0.75 | 0.197492 |
Target: 5'- -gUGcUUGCCGGUGUGGUgcacgaucAGCACCCc -3' miRNA: 3'- gaAC-AGCGGCCACACCGac------UCGUGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 48957 | 0.66 | 0.673919 |
Target: 5'- --cGUCGgCGGgcgggGUGGCcgGGGCgggcgcgucgguGCCCu -3' miRNA: 3'- gaaCAGCgGCCa----CACCGa-CUCG------------UGGG- -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 49611 | 0.66 | 0.663279 |
Target: 5'- --cGUCguugcggcugGCCGGUGUccagcccagcGGCUccagGAGCACCg -3' miRNA: 3'- gaaCAG----------CGGCCACA----------CCGA----CUCGUGGg -5' |
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18990 | 3' | -57.5 | NC_004684.1 | + | 51153 | 0.66 | 0.663279 |
Target: 5'- --cGcCGCCgacuccucGGUGUGGCcGAuGCGCCg -3' miRNA: 3'- gaaCaGCGG--------CCACACCGaCU-CGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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