miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18990 3' -57.5 NC_004684.1 + 17608 0.67 0.588556
Target:  5'- --cGUCGuCCGGcGUGGCaccGCGCUCg -3'
miRNA:   3'- gaaCAGC-GGCCaCACCGacuCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 25378 0.67 0.588556
Target:  5'- --cGcCGCCuGGUGUGGCcgGAagGCCCu -3'
miRNA:   3'- gaaCaGCGG-CCACACCGa-CUcgUGGG- -5'
18990 3' -57.5 NC_004684.1 + 26839 0.67 0.588556
Target:  5'- --cG-CGCUGGUGgaccGGUcGAGCACCa -3'
miRNA:   3'- gaaCaGCGGCCACa---CCGaCUCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 53314 0.67 0.577953
Target:  5'- --cGU-GCCacguGGUG-GuGCUGGGCACCCu -3'
miRNA:   3'- gaaCAgCGG----CCACaC-CGACUCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 28071 0.67 0.577953
Target:  5'- ----cCGgCGGUGUGGCcGGGCcgccgcgcgACCCg -3'
miRNA:   3'- gaacaGCgGCCACACCGaCUCG---------UGGG- -5'
18990 3' -57.5 NC_004684.1 + 14505 0.67 0.567391
Target:  5'- --gGUCGCCGGUGgcacGGUgacGGUgACCCu -3'
miRNA:   3'- gaaCAGCGGCCACa---CCGac-UCG-UGGG- -5'
18990 3' -57.5 NC_004684.1 + 5959 0.67 0.567391
Target:  5'- -cUGgccgCGCCGGUGagcgaccGGCcGAGCAaguCCCg -3'
miRNA:   3'- gaACa---GCGGCCACa------CCGaCUCGU---GGG- -5'
18990 3' -57.5 NC_004684.1 + 55795 0.67 0.567391
Target:  5'- --cGUCGCCGGauacGGCUGucGCGCUg -3'
miRNA:   3'- gaaCAGCGGCCaca-CCGACu-CGUGGg -5'
18990 3' -57.5 NC_004684.1 + 57712 0.67 0.567391
Target:  5'- --gGUCaCCGG-GUGGCUGGccGUACCg -3'
miRNA:   3'- gaaCAGcGGCCaCACCGACU--CGUGGg -5'
18990 3' -57.5 NC_004684.1 + 61246 0.67 0.567391
Target:  5'- -----gGCCGG-GUGGCUGAccgaguaCACCCa -3'
miRNA:   3'- gaacagCGGCCaCACCGACUc------GUGGG- -5'
18990 3' -57.5 NC_004684.1 + 39035 0.68 0.556879
Target:  5'- gCUUGgUGCCGGUGaUGgagucGCUG-GCACCUu -3'
miRNA:   3'- -GAACaGCGGCCAC-AC-----CGACuCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 19015 0.68 0.556879
Target:  5'- --gGUCGCUGGUcuccgGGUUG-GCACCg -3'
miRNA:   3'- gaaCAGCGGCCAca---CCGACuCGUGGg -5'
18990 3' -57.5 NC_004684.1 + 10861 0.68 0.546425
Target:  5'- --cGUCGCgGGUGUcGC-GGGCACgCa -3'
miRNA:   3'- gaaCAGCGgCCACAcCGaCUCGUGgG- -5'
18990 3' -57.5 NC_004684.1 + 9239 0.68 0.536033
Target:  5'- -gUGUCGUCGGccaGGCcGAGCAUCUu -3'
miRNA:   3'- gaACAGCGGCCacaCCGaCUCGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 16880 0.69 0.495224
Target:  5'- -cUG-CGCCGGUGUGGUgcaGAguuucaagcGCACaCCg -3'
miRNA:   3'- gaACaGCGGCCACACCGa--CU---------CGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 15926 0.69 0.485239
Target:  5'- --cGUgCGUCGGUGUGGCgaugccGCGCgCCa -3'
miRNA:   3'- gaaCA-GCGGCCACACCGacu---CGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 26019 0.69 0.485239
Target:  5'- cCUUGUUGCCGaUGUucGGCgaGAGCGCgCu -3'
miRNA:   3'- -GAACAGCGGCcACA--CCGa-CUCGUGgG- -5'
18990 3' -57.5 NC_004684.1 + 13279 0.69 0.485239
Target:  5'- --gGUgGCCGccgGUGGCUGGuGCGCgCCg -3'
miRNA:   3'- gaaCAgCGGCca-CACCGACU-CGUG-GG- -5'
18990 3' -57.5 NC_004684.1 + 27262 0.69 0.485239
Target:  5'- -cUGUCGgcguucggcaCGGUGaccgGGCUGAucaGCACCCu -3'
miRNA:   3'- gaACAGCg---------GCCACa---CCGACU---CGUGGG- -5'
18990 3' -57.5 NC_004684.1 + 41447 0.69 0.475351
Target:  5'- -gUGcCGCCGGUGUcaguggGGCUGA-C-CCCg -3'
miRNA:   3'- gaACaGCGGCCACA------CCGACUcGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.