miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 64305 0.67 0.748499
Target:  5'- cCCugGCCGucGugGUggUUGaacaCCGCCa -3'
miRNA:   3'- -GGugCGGCuaCugCAuuGAC----GGCGGc -5'
18991 3' -55.6 NC_004684.1 + 29365 0.67 0.748499
Target:  5'- ---aGCUGGUGAUGgugAGCUGUCGgCGg -3'
miRNA:   3'- ggugCGGCUACUGCa--UUGACGGCgGC- -5'
18991 3' -55.6 NC_004684.1 + 18517 0.67 0.747491
Target:  5'- gCCAcgucggcCGCCGGUG-CGcccGCcggGCCGCCGa -3'
miRNA:   3'- -GGU-------GCGGCUACuGCau-UGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66472 0.67 0.743443
Target:  5'- uCCACGCCGccacccgGUGGCGgcuaggccuUGGCggcggccucgcggGCCGCCu -3'
miRNA:   3'- -GGUGCGGC-------UACUGC---------AUUGa------------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 58410 0.67 0.738361
Target:  5'- gCGCGCC-AUGACccGGC-GUCGCCGg -3'
miRNA:   3'- gGUGCGGcUACUGcaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 16313 0.67 0.736321
Target:  5'- aCCGggcCGCCGGUGAUGUAAUgaccagcgaggaGCgGCUGg -3'
miRNA:   3'- -GGU---GCGGCUACUGCAUUGa-----------CGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 61412 0.67 0.736321
Target:  5'- aCGcCGCCGAgggcggcggcccGGCGgcGgUGCUGCCGg -3'
miRNA:   3'- gGU-GCGGCUa-----------CUGCauUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 27064 0.67 0.728121
Target:  5'- uCCAgCGCCGGguccgcaGGCGUGGacaucGCCGCCc -3'
miRNA:   3'- -GGU-GCGGCUa------CUGCAUUga---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 52723 0.67 0.728121
Target:  5'- gCAUGCCGGUGAUGgcGACgUGCCcggcaCCGa -3'
miRNA:   3'- gGUGCGGCUACUGCa-UUG-ACGGc----GGC- -5'
18991 3' -55.6 NC_004684.1 + 42760 0.67 0.726062
Target:  5'- gCCugGCCGGUG-CGauccccgguuugAGCgGCCuGCCGg -3'
miRNA:   3'- -GGugCGGCUACuGCa-----------UUGaCGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 11593 0.67 0.717791
Target:  5'- gCC-CGCCGGUgcgccuggacGACGgcaccgAGCUgGCCGUCGg -3'
miRNA:   3'- -GGuGCGGCUA----------CUGCa-----UUGA-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 10600 0.67 0.717791
Target:  5'- gCGCGCgaGGUG-CGcAACUGCCGuuGc -3'
miRNA:   3'- gGUGCGg-CUACuGCaUUGACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 42906 0.67 0.717791
Target:  5'- aCCGCcaCCGAcGACG-AAC-GCCGCCa -3'
miRNA:   3'- -GGUGc-GGCUaCUGCaUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 43158 0.67 0.717791
Target:  5'- cCUACaCCGAcgagGACGUggUcGCCGCCc -3'
miRNA:   3'- -GGUGcGGCUa---CUGCAuuGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 54304 0.67 0.717791
Target:  5'- gCugGCCGAccucGGCcccgAGCagGCCGCCGg -3'
miRNA:   3'- gGugCGGCUa---CUGca--UUGa-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 6019 0.67 0.717791
Target:  5'- aCCGC-CCGGUGGCc-AGCgcgGCCaGCCGg -3'
miRNA:   3'- -GGUGcGGCUACUGcaUUGa--CGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 2194 0.67 0.717791
Target:  5'- aCCACGCCGcgc-CGUAguGCUG-CGCCa -3'
miRNA:   3'- -GGUGCGGCuacuGCAU--UGACgGCGGc -5'
18991 3' -55.6 NC_004684.1 + 19410 0.67 0.717791
Target:  5'- gCCACGgCGgcGGCGUA--UGCgGCCu -3'
miRNA:   3'- -GGUGCgGCuaCUGCAUugACGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 12205 0.67 0.717791
Target:  5'- uCCucaGCCGggGucggggguuGCGUGAUgGCCGCCGc -3'
miRNA:   3'- -GGug-CGGCuaC---------UGCAUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 49335 0.67 0.717791
Target:  5'- aCGCGCCGcUGugGggcGACgUGCCGacgcCCGg -3'
miRNA:   3'- gGUGCGGCuACugCa--UUG-ACGGC----GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.