miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 37620 0.66 0.787835
Target:  5'- cCCAUGCCGAacgccgucggUG-CGcUGGCcaugGCCGCCc -3'
miRNA:   3'- -GGUGCGGCU----------ACuGC-AUUGa---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 43564 0.66 0.787835
Target:  5'- gCC-CGCCGc--ACcu-GCUGCCGCCGc -3'
miRNA:   3'- -GGuGCGGCuacUGcauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15924 0.66 0.787835
Target:  5'- -uGCGUCGGUGugGcga-UGCCGCgCGc -3'
miRNA:   3'- ggUGCGGCUACugCauugACGGCG-GC- -5'
18991 3' -55.6 NC_004684.1 + 25792 0.66 0.778205
Target:  5'- gCACGCCGGUGuuCGUcaccAACUG--GCCGg -3'
miRNA:   3'- gGUGCGGCUACu-GCA----UUGACggCGGC- -5'
18991 3' -55.6 NC_004684.1 + 12909 0.66 0.778205
Target:  5'- gCCAgcggUGCCGGUGcgcCGUcggccAACUucGCCGCCGu -3'
miRNA:   3'- -GGU----GCGGCUACu--GCA-----UUGA--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 18584 0.66 0.778205
Target:  5'- aCCGCGCUGGUGGCucugGACgaugGCUuugagGCCa -3'
miRNA:   3'- -GGUGCGGCUACUGca--UUGa---CGG-----CGGc -5'
18991 3' -55.6 NC_004684.1 + 833 0.66 0.778205
Target:  5'- -aGCGCCGccagGGCGUcGgUGUCGUCGg -3'
miRNA:   3'- ggUGCGGCua--CUGCAuUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 33818 0.66 0.772357
Target:  5'- gCCGCGCUGcgucgaGUAguucgggccaccgccGCUGCCGCUGg -3'
miRNA:   3'- -GGUGCGGCuacug-CAU---------------UGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 10310 0.66 0.768432
Target:  5'- cCCGCaCCGAUGugcGCGccgcAACgcagGCCGCCa -3'
miRNA:   3'- -GGUGcGGCUAC---UGCa---UUGa---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 51048 0.66 0.768432
Target:  5'- gCCAcCGCCGGUGACGa---UG-CGCCc -3'
miRNA:   3'- -GGU-GCGGCUACUGCauugACgGCGGc -5'
18991 3' -55.6 NC_004684.1 + 22951 0.66 0.768432
Target:  5'- aCACGCCGAaGGCcagaAGCgcgccaacGCCGCCa -3'
miRNA:   3'- gGUGCGGCUaCUGca--UUGa-------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 39778 0.66 0.768432
Target:  5'- uCCugGCCGuucucGAUgcgcugGUAGCUGC-GCCGg -3'
miRNA:   3'- -GGugCGGCua---CUG------CAUUGACGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 3580 0.66 0.767447
Target:  5'- gCCACaGCgGG-GACGUGgaguacgucgcgcACUggGCCGCCGa -3'
miRNA:   3'- -GGUG-CGgCUaCUGCAU-------------UGA--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 58391 0.66 0.758526
Target:  5'- aCCGCGCgUGGaGGCcuUGGCccgGCCGCCGg -3'
miRNA:   3'- -GGUGCG-GCUaCUGc-AUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 56309 0.66 0.758526
Target:  5'- gCGCGCCGG-GACGUggaGACcgcGCUGCgCGa -3'
miRNA:   3'- gGUGCGGCUaCUGCA---UUGa--CGGCG-GC- -5'
18991 3' -55.6 NC_004684.1 + 47131 0.66 0.758526
Target:  5'- -uGCGCCucGGUGGCGUAgGCgGCC-CCGg -3'
miRNA:   3'- ggUGCGG--CUACUGCAU-UGaCGGcGGC- -5'
18991 3' -55.6 NC_004684.1 + 11757 0.66 0.758526
Target:  5'- gCGCGgCGGUcACGUug--GCCGCCGu -3'
miRNA:   3'- gGUGCgGCUAcUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 9293 0.67 0.748499
Target:  5'- cCCgACGCCGAcggUGGCGcuACcccCCGCCGa -3'
miRNA:   3'- -GG-UGCGGCU---ACUGCauUGac-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 55549 0.67 0.748499
Target:  5'- cUCGCGCCGcUGGCcgccGUGGCccgGUgGCCGg -3'
miRNA:   3'- -GGUGCGGCuACUG----CAUUGa--CGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15856 0.67 0.748499
Target:  5'- gCACGCCGAggucauCG-AGCacgugGCCGCCa -3'
miRNA:   3'- gGUGCGGCUacu---GCaUUGa----CGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.