miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 29543 0.66 0.787835
Target:  5'- aCCAgGUCGAUGuCG-AACcgGUCGCCc -3'
miRNA:   3'- -GGUgCGGCUACuGCaUUGa-CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 9914 0.66 0.797313
Target:  5'- uCCGgGCUGAccgaGGCgGUGAUUGUgGCCGg -3'
miRNA:   3'- -GGUgCGGCUa---CUG-CAUUGACGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 833 0.66 0.778205
Target:  5'- -aGCGCCGccagGGCGUcGgUGUCGUCGg -3'
miRNA:   3'- ggUGCGGCua--CUGCAuUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 11757 0.66 0.758526
Target:  5'- gCGCGgCGGUcACGUug--GCCGCCGu -3'
miRNA:   3'- gGUGCgGCUAcUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 22324 0.66 0.797313
Target:  5'- gCGCGuuGAUcGCGcGGgUGCCGUCGc -3'
miRNA:   3'- gGUGCggCUAcUGCaUUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31400 0.66 0.805704
Target:  5'- uCCugGCUGGUcugcccggucaccGAgGUAcgGCgguaGCCGCCGa -3'
miRNA:   3'- -GGugCGGCUA-------------CUgCAU--UGa---CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 11656 0.66 0.797313
Target:  5'- gCCACGCCagcacGGCGgccAACgUGaCCGCCGc -3'
miRNA:   3'- -GGUGCGGcua--CUGCa--UUG-AC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 8725 0.66 0.806628
Target:  5'- gCgGCGCUGAUcccGAUGUuc--GCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUA---CUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31852 0.66 0.797313
Target:  5'- uCgGgGUCGAUGGCGUAcaggccgacguACaggGCCGUCGg -3'
miRNA:   3'- -GgUgCGGCUACUGCAU-----------UGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 40947 0.66 0.806628
Target:  5'- gCACGCCGcUG-CG--GCUGCCGUUc -3'
miRNA:   3'- gGUGCGGCuACuGCauUGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 65741 0.66 0.787835
Target:  5'- gCCACGaaguuggccUCGcgGGCGUug--GCCGCCGc -3'
miRNA:   3'- -GGUGC---------GGCuaCUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 1335 0.66 0.797313
Target:  5'- uCUggGCCGGggccgGGCGaccGACcagGCCGCCGa -3'
miRNA:   3'- -GGugCGGCUa----CUGCa--UUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 43564 0.66 0.787835
Target:  5'- gCC-CGCCGc--ACcu-GCUGCCGCCGc -3'
miRNA:   3'- -GGuGCGGCuacUGcauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 37620 0.66 0.787835
Target:  5'- cCCAUGCCGAacgccgucggUG-CGcUGGCcaugGCCGCCc -3'
miRNA:   3'- -GGUGCGGCU----------ACuGC-AUUGa---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 33657 0.66 0.806628
Target:  5'- cCCuCGCCGGgcaUGGCGUcGCUGUgcaccaccaccgCGCUGg -3'
miRNA:   3'- -GGuGCGGCU---ACUGCAuUGACG------------GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15924 0.66 0.787835
Target:  5'- -uGCGUCGGUGugGcga-UGCCGCgCGc -3'
miRNA:   3'- ggUGCGGCUACugCauugACGGCG-GC- -5'
18991 3' -55.6 NC_004684.1 + 50132 0.66 0.797313
Target:  5'- uCCugGCCug-GAgccaggcacCGgccacGCUGCCGCCGa -3'
miRNA:   3'- -GGugCGGcuaCU---------GCau---UGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 64305 0.67 0.748499
Target:  5'- cCCugGCCGucGugGUggUUGaacaCCGCCa -3'
miRNA:   3'- -GGugCGGCuaCugCAuuGAC----GGCGGc -5'
18991 3' -55.6 NC_004684.1 + 6521 0.67 0.696902
Target:  5'- gCCAaGCgCGAaGGCGUucacGCcGCCGCCGa -3'
miRNA:   3'- -GGUgCG-GCUaCUGCAu---UGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 42906 0.67 0.717791
Target:  5'- aCCGCcaCCGAcGACG-AAC-GCCGCCa -3'
miRNA:   3'- -GGUGc-GGCUaCUGCaUUGaCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.