miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 25792 0.66 0.778205
Target:  5'- gCACGCCGGUGuuCGUcaccAACUG--GCCGg -3'
miRNA:   3'- gGUGCGGCUACu-GCA----UUGACggCGGC- -5'
18991 3' -55.6 NC_004684.1 + 33657 0.66 0.806628
Target:  5'- cCCuCGCCGGgcaUGGCGUcGCUGUgcaccaccaccgCGCUGg -3'
miRNA:   3'- -GGuGCGGCU---ACUGCAuUGACG------------GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 22951 0.66 0.768432
Target:  5'- aCACGCCGAaGGCcagaAGCgcgccaacGCCGCCa -3'
miRNA:   3'- gGUGCGGCUaCUGca--UUGa-------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 8725 0.66 0.806628
Target:  5'- gCgGCGCUGAUcccGAUGUuc--GCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUA---CUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 11656 0.66 0.797313
Target:  5'- gCCACGCCagcacGGCGgccAACgUGaCCGCCGc -3'
miRNA:   3'- -GGUGCGGcua--CUGCa--UUG-AC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 37620 0.66 0.787835
Target:  5'- cCCAUGCCGAacgccgucggUG-CGcUGGCcaugGCCGCCc -3'
miRNA:   3'- -GGUGCGGCU----------ACuGC-AUUGa---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 10310 0.66 0.768432
Target:  5'- cCCGCaCCGAUGugcGCGccgcAACgcagGCCGCCa -3'
miRNA:   3'- -GGUGcGGCUAC---UGCa---UUGa---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 17612 0.66 0.806628
Target:  5'- aCCACGUCGuccGGCGUGGCa-CCGCg- -3'
miRNA:   3'- -GGUGCGGCua-CUGCAUUGacGGCGgc -5'
18991 3' -55.6 NC_004684.1 + 65741 0.66 0.787835
Target:  5'- gCCACGaaguuggccUCGcgGGCGUug--GCCGCCGc -3'
miRNA:   3'- -GGUGC---------GGCuaCUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 18584 0.66 0.778205
Target:  5'- aCCGCGCUGGUGGCucugGACgaugGCUuugagGCCa -3'
miRNA:   3'- -GGUGCGGCUACUGca--UUGa---CGG-----CGGc -5'
18991 3' -55.6 NC_004684.1 + 56309 0.66 0.758526
Target:  5'- gCGCGCCGG-GACGUggaGACcgcGCUGCgCGa -3'
miRNA:   3'- gGUGCGGCUaCUGCA---UUGa--CGGCG-GC- -5'
18991 3' -55.6 NC_004684.1 + 58391 0.66 0.758526
Target:  5'- aCCGCGCgUGGaGGCcuUGGCccgGCCGCCGg -3'
miRNA:   3'- -GGUGCG-GCUaCUGc-AUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 3580 0.66 0.767447
Target:  5'- gCCACaGCgGG-GACGUGgaguacgucgcgcACUggGCCGCCGa -3'
miRNA:   3'- -GGUG-CGgCUaCUGCAU-------------UGA--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 12909 0.66 0.778205
Target:  5'- gCCAgcggUGCCGGUGcgcCGUcggccAACUucGCCGCCGu -3'
miRNA:   3'- -GGU----GCGGCUACu--GCA-----UUGA--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 51048 0.66 0.768432
Target:  5'- gCCAcCGCCGGUGACGa---UG-CGCCc -3'
miRNA:   3'- -GGU-GCGGCUACUGCauugACgGCGGc -5'
18991 3' -55.6 NC_004684.1 + 47131 0.66 0.758526
Target:  5'- -uGCGCCucGGUGGCGUAgGCgGCC-CCGg -3'
miRNA:   3'- ggUGCGG--CUACUGCAU-UGaCGGcGGC- -5'
18991 3' -55.6 NC_004684.1 + 39778 0.66 0.768432
Target:  5'- uCCugGCCGuucucGAUgcgcugGUAGCUGC-GCCGg -3'
miRNA:   3'- -GGugCGGCua---CUG------CAUUGACGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 9914 0.66 0.797313
Target:  5'- uCCGgGCUGAccgaGGCgGUGAUUGUgGCCGg -3'
miRNA:   3'- -GGUgCGGCUa---CUG-CAUUGACGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 56025 0.66 0.787835
Target:  5'- aCCACGCUGcUGGCcaccaccgugGGCcuggagGCCGCCGu -3'
miRNA:   3'- -GGUGCGGCuACUGca--------UUGa-----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66881 0.66 0.787835
Target:  5'- -aGCGCCGGUGGCGaccuucGGC-GCgGCCu -3'
miRNA:   3'- ggUGCGGCUACUGCa-----UUGaCGgCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.