miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 833 0.66 0.778205
Target:  5'- -aGCGCCGccagGGCGUcGgUGUCGUCGg -3'
miRNA:   3'- ggUGCGGCua--CUGCAuUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 924 0.72 0.447174
Target:  5'- gCACGCCGuugaucuGUGugGUGuccauGCggGCCGCCa -3'
miRNA:   3'- gGUGCGGC-------UACugCAU-----UGa-CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 1335 0.66 0.797313
Target:  5'- uCUggGCCGGggccgGGCGaccGACcagGCCGCCGa -3'
miRNA:   3'- -GGugCGGCUa----CUGCa--UUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 1706 0.68 0.686364
Target:  5'- -uGCGCCGGUGcAgGUGccggaACUGCUGCUc -3'
miRNA:   3'- ggUGCGGCUAC-UgCAU-----UGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 2194 0.67 0.717791
Target:  5'- aCCACGCCGcgc-CGUAguGCUG-CGCCa -3'
miRNA:   3'- -GGUGCGGCuacuGCAU--UGACgGCGGc -5'
18991 3' -55.6 NC_004684.1 + 2253 0.76 0.26928
Target:  5'- gCCACGCUGAUcagcgcggcGGCGggcAUUGCCGCCa -3'
miRNA:   3'- -GGUGCGGCUA---------CUGCau-UGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 2321 0.77 0.224134
Target:  5'- gCACGUCGGUGACcacgccgucuacccgGACUGCCGCCc -3'
miRNA:   3'- gGUGCGGCUACUGca-------------UUGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 2339 0.67 0.696902
Target:  5'- gCCGCGCUGAUcaGCGUGGCguUGCgGuuGg -3'
miRNA:   3'- -GGUGCGGCUAc-UGCAUUG--ACGgCggC- -5'
18991 3' -55.6 NC_004684.1 + 3264 0.75 0.28986
Target:  5'- gCCugGCCGGacaucgugGACGc-ACUGCUGCCGg -3'
miRNA:   3'- -GGugCGGCUa-------CUGCauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 3481 0.68 0.675777
Target:  5'- gCCACGCCGGgccgcacCGUGGCcGCCaggacGCCGc -3'
miRNA:   3'- -GGUGCGGCUacu----GCAUUGaCGG-----CGGC- -5'
18991 3' -55.6 NC_004684.1 + 3580 0.66 0.767447
Target:  5'- gCCACaGCgGG-GACGUGgaguacgucgcgcACUggGCCGCCGa -3'
miRNA:   3'- -GGUG-CGgCUaCUGCAU-------------UGA--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 3981 0.69 0.600046
Target:  5'- uCCugGCCGGUGGCagcuccagucgauGUGcgcccaccacCUGCUGCCGu -3'
miRNA:   3'- -GGugCGGCUACUG-------------CAUu---------GACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 4224 0.77 0.237621
Target:  5'- uCCGCGCCGAUG-CGcuccugGACcuggaGCCGCCGg -3'
miRNA:   3'- -GGUGCGGCUACuGCa-----UUGa----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 4990 0.72 0.448127
Target:  5'- gCCGCcgagGCCGGUGGCGaccagGCCGCCu -3'
miRNA:   3'- -GGUG----CGGCUACUGCauugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 5262 0.71 0.487105
Target:  5'- cCCucuuCGgCGAUGGCGggaauguugAugUGCCGCCa -3'
miRNA:   3'- -GGu---GCgGCUACUGCa--------UugACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 5680 0.68 0.64382
Target:  5'- -aACGCCGGUGGCauc-CUGaCGCCGg -3'
miRNA:   3'- ggUGCGGCUACUGcauuGACgGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 5962 0.67 0.696902
Target:  5'- gCCGCGCCGGUGA-GcGACcgGCCGagcaagucCCGg -3'
miRNA:   3'- -GGUGCGGCUACUgCaUUGa-CGGC--------GGC- -5'
18991 3' -55.6 NC_004684.1 + 6019 0.67 0.717791
Target:  5'- aCCGC-CCGGUGGCc-AGCgcgGCCaGCCGg -3'
miRNA:   3'- -GGUGcGGCUACUGcaUUGa--CGG-CGGC- -5'
18991 3' -55.6 NC_004684.1 + 6521 0.67 0.696902
Target:  5'- gCCAaGCgCGAaGGCGUucacGCcGCCGCCGa -3'
miRNA:   3'- -GGUgCG-GCUaCUGCAu---UGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 6898 0.69 0.611772
Target:  5'- uCCAgGCCGAcGGCGUcgUagugGCCGUCGu -3'
miRNA:   3'- -GGUgCGGCUaCUGCAuuGa---CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.