miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 66974 0.68 0.669405
Target:  5'- gCCGCGCCGaAggucgccaccggcgcUGACGUGcuggccagcGCggucgagGCCGCCa -3'
miRNA:   3'- -GGUGCGGC-U---------------ACUGCAU---------UGa------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 66881 0.66 0.787835
Target:  5'- -aGCGCCGGUGGCGaccuucGGC-GCgGCCu -3'
miRNA:   3'- ggUGCGGCUACUGCa-----UUGaCGgCGGc -5'
18991 3' -55.6 NC_004684.1 + 66751 0.77 0.225856
Target:  5'- gCAcCGCCGGUGACcgGGCcGCCGCCGa -3'
miRNA:   3'- gGU-GCGGCUACUGcaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66602 0.77 0.220161
Target:  5'- gCCGCGCUGAaGGCGgcccGCgagGCCGCCGc -3'
miRNA:   3'- -GGUGCGGCUaCUGCau--UGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66472 0.67 0.743443
Target:  5'- uCCACGCCGccacccgGUGGCGgcuaggccuUGGCggcggccucgcggGCCGCCu -3'
miRNA:   3'- -GGUGCGGC-------UACUGC---------AUUGa------------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 65741 0.66 0.787835
Target:  5'- gCCACGaaguuggccUCGcgGGCGUug--GCCGCCGc -3'
miRNA:   3'- -GGUGC---------GGCuaCUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 65404 0.67 0.717791
Target:  5'- -gGCGCUGGccGugGUGcacaGCgagGCCGCCGu -3'
miRNA:   3'- ggUGCGGCUa-CugCAU----UGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 64773 0.71 0.487105
Target:  5'- aCAUGCuCGAcuggGACGUAcgcaaggugccGCUGCgCGCCGa -3'
miRNA:   3'- gGUGCG-GCUa---CUGCAU-----------UGACG-GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 64442 0.68 0.654495
Target:  5'- aCCGCGCCGAccggguucaagGACGUGACcaaGCUGUa- -3'
miRNA:   3'- -GGUGCGGCUa----------CUGCAUUGa--CGGCGgc -5'
18991 3' -55.6 NC_004684.1 + 64305 0.67 0.748499
Target:  5'- cCCugGCCGucGugGUggUUGaacaCCGCCa -3'
miRNA:   3'- -GGugCGGCuaCugCAuuGAC----GGCGGc -5'
18991 3' -55.6 NC_004684.1 + 63053 0.69 0.62245
Target:  5'- aCCGCcuaacgGuuGGUGGCGgcuACcgUGCCGCCGu -3'
miRNA:   3'- -GGUG------CggCUACUGCau-UG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 62921 0.73 0.411845
Target:  5'- cCCugGCCGGUGACGaAGCcgaccagcgcgcggcGCgCGCCGa -3'
miRNA:   3'- -GGugCGGCUACUGCaUUGa--------------CG-GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 62610 0.68 0.66515
Target:  5'- aCCGCGCCGA-GGCGc--UUGCUGgCGa -3'
miRNA:   3'- -GGUGCGGCUaCUGCauuGACGGCgGC- -5'
18991 3' -55.6 NC_004684.1 + 62183 0.68 0.654495
Target:  5'- cCCG-GCCGAUGAUGgcgAACacguUGCCGUCc -3'
miRNA:   3'- -GGUgCGGCUACUGCa--UUG----ACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 62093 0.69 0.633135
Target:  5'- gCGCGUCGu---CGUAGCUGgCGCUGg -3'
miRNA:   3'- gGUGCGGCuacuGCAUUGACgGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 61684 0.68 0.64382
Target:  5'- gCACGCCauUGGCGUcGgUGCCGUgGg -3'
miRNA:   3'- gGUGCGGcuACUGCAuUgACGGCGgC- -5'
18991 3' -55.6 NC_004684.1 + 61541 0.69 0.611772
Target:  5'- aCGCGagcaCCGgcGGCGaGACaaUGCCGCCGg -3'
miRNA:   3'- gGUGC----GGCuaCUGCaUUG--ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 61517 0.72 0.448127
Target:  5'- gCGCGCCagcaGUGACGUGcaggcgcugGCgUGCCGCUGg -3'
miRNA:   3'- gGUGCGGc---UACUGCAU---------UG-ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 61412 0.67 0.736321
Target:  5'- aCGcCGCCGAgggcggcggcccGGCGgcGgUGCUGCCGg -3'
miRNA:   3'- gGU-GCGGCUa-----------CUGCauUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 61183 0.7 0.548337
Target:  5'- gCCGCGUCGAccggUGGCGgcguuGCggagacaaUGCCGCCa -3'
miRNA:   3'- -GGUGCGGCU----ACUGCau---UG--------ACGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.