miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 61517 0.72 0.448127
Target:  5'- gCGCGCCagcaGUGACGUGcaggcgcugGCgUGCCGCUGg -3'
miRNA:   3'- gGUGCGGc---UACUGCAU---------UG-ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 16879 0.72 0.429296
Target:  5'- uCUGCGCCGGUGugGUGcagaguuucaaGCgcacaCCGCCGa -3'
miRNA:   3'- -GGUGCGGCUACugCAU-----------UGac---GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 30995 0.72 0.429296
Target:  5'- -gACGCUGAUGGCGcAGCUGggccugaCGCCGa -3'
miRNA:   3'- ggUGCGGCUACUGCaUUGACg------GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31224 0.72 0.429296
Target:  5'- gCCgACGCCGGUGACGccAUUGCCGauGu -3'
miRNA:   3'- -GG-UGCGGCUACUGCauUGACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 11301 0.72 0.429296
Target:  5'- aCCACGCUGGUGGCc--ACcGCUGCCu -3'
miRNA:   3'- -GGUGCGGCUACUGcauUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 58505 0.72 0.438654
Target:  5'- gCCGCGCCGAcuGCGguccAGCgUGCCGuuGg -3'
miRNA:   3'- -GGUGCGGCUacUGCa---UUG-ACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 61066 0.72 0.438654
Target:  5'- aCGgGCCGGUGGCGgcAUUgucuccgcaacGCCGCCa -3'
miRNA:   3'- gGUgCGGCUACUGCauUGA-----------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 13272 0.72 0.447174
Target:  5'- gCGCGCUGGUGGCcgccgGUGGCUggugcgcGCCGUCGg -3'
miRNA:   3'- gGUGCGGCUACUG-----CAUUGA-------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 27744 0.72 0.448127
Target:  5'- cUCGCGCCgucGAUGACGcAGgUGUCGCCc -3'
miRNA:   3'- -GGUGCGG---CUACUGCaUUgACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 48525 0.72 0.420057
Target:  5'- cCCuCGCgGAUGAUGUAGUUGCCGaCCu -3'
miRNA:   3'- -GGuGCGgCUACUGCAUUGACGGC-GGc -5'
18991 3' -55.6 NC_004684.1 + 62921 0.73 0.411845
Target:  5'- cCCugGCCGGUGACGaAGCcgaccagcgcgcggcGCgCGCCGa -3'
miRNA:   3'- -GGugCGGCUACUGCaUUGa--------------CG-GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 45852 0.73 0.393077
Target:  5'- gCCGCGCUcguuGAUGGCGUcggcgaucAugUGCgCGCCGu -3'
miRNA:   3'- -GGUGCGG----CUACUGCA--------UugACG-GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 48790 0.78 0.209138
Target:  5'- gCGgGCCGAUGAUGcagGACagGCCGCCGu -3'
miRNA:   3'- gGUgCGGCUACUGCa--UUGa-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 2321 0.77 0.224134
Target:  5'- gCACGUCGGUGACcacgccgucuacccgGACUGCCGCCc -3'
miRNA:   3'- gGUGCGGCUACUGca-------------UUGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 31719 0.77 0.231675
Target:  5'- uUCAuCGCCGGUGGCGacacACcGCCGCCGa -3'
miRNA:   3'- -GGU-GCGGCUACUGCau--UGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 2253 0.76 0.26928
Target:  5'- gCCACGCUGAUcagcgcggcGGCGggcAUUGCCGCCa -3'
miRNA:   3'- -GGUGCGGCUA---------CUGCau-UGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 28052 0.75 0.289154
Target:  5'- aUCAUGCCGGUGGucggccccggcggUGUGGCcggGCCGCCGc -3'
miRNA:   3'- -GGUGCGGCUACU-------------GCAUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 3264 0.75 0.28986
Target:  5'- gCCugGCCGGacaucgugGACGc-ACUGCUGCCGg -3'
miRNA:   3'- -GGugCGGCUa-------CUGCauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15376 0.75 0.311653
Target:  5'- gCGCGCUGGUGAuCGgcuACgagGCCGCCa -3'
miRNA:   3'- gGUGCGGCUACU-GCau-UGa--CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 12817 0.74 0.334668
Target:  5'- aCGCGcCCGAgGACGgcggcuCUGCUGCCGa -3'
miRNA:   3'- gGUGC-GGCUaCUGCauu---GACGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.