miRNA display CGI


Results 1 - 20 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 11117 1.11 0.001119
Target:  5'- aCCACGCCGAUGACGUAACUGCCGCCGu -3'
miRNA:   3'- -GGUGCGGCUACUGCAUUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15783 0.83 0.093489
Target:  5'- aCgAUGCCGGUGGCGUcGgUGCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUACUGCAuUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 26715 0.82 0.101555
Target:  5'- uCCGCGCCGAcggugucguUGGCGaUGACgccGCCGCCGg -3'
miRNA:   3'- -GGUGCGGCU---------ACUGC-AUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 9851 0.81 0.122992
Target:  5'- aCCGcCGCCGGUGA----GCUGCCGCCGg -3'
miRNA:   3'- -GGU-GCGGCUACUgcauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 50697 0.79 0.160945
Target:  5'- gCCACGCCGAUGACcc-GCcGaCCGCCGa -3'
miRNA:   3'- -GGUGCGGCUACUGcauUGaC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 26490 0.79 0.165273
Target:  5'- gCGCGCCGGUGGCGgcguUGGCcagaucGCCGCCGa -3'
miRNA:   3'- gGUGCGGCUACUGC----AUUGa-----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 48790 0.78 0.209138
Target:  5'- gCGgGCCGAUGAUGcagGACagGCCGCCGu -3'
miRNA:   3'- gGUgCGGCUACUGCa--UUGa-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 66602 0.77 0.220161
Target:  5'- gCCGCGCUGAaGGCGgcccGCgagGCCGCCGc -3'
miRNA:   3'- -GGUGCGGCUaCUGCau--UGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 2321 0.77 0.224134
Target:  5'- gCACGUCGGUGACcacgccgucuacccgGACUGCCGCCc -3'
miRNA:   3'- gGUGCGGCUACUGca-------------UUGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 66751 0.77 0.225856
Target:  5'- gCAcCGCCGGUGACcgGGCcGCCGCCGa -3'
miRNA:   3'- gGU-GCGGCUACUGcaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31719 0.77 0.231675
Target:  5'- uUCAuCGCCGGUGGCGacacACcGCCGCCGa -3'
miRNA:   3'- -GGU-GCGGCUACUGCau--UGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 4224 0.77 0.237621
Target:  5'- uCCGCGCCGAUG-CGcuccugGACcuggaGCCGCCGg -3'
miRNA:   3'- -GGUGCGGCUACuGCa-----UUGa----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 2253 0.76 0.26928
Target:  5'- gCCACGCUGAUcagcgcggcGGCGggcAUUGCCGCCa -3'
miRNA:   3'- -GGUGCGGCUA---------CUGCau-UGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 28052 0.75 0.289154
Target:  5'- aUCAUGCCGGUGGucggccccggcggUGUGGCcggGCCGCCGc -3'
miRNA:   3'- -GGUGCGGCUACU-------------GCAUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 3264 0.75 0.28986
Target:  5'- gCCugGCCGGacaucgugGACGc-ACUGCUGCCGg -3'
miRNA:   3'- -GGugCGGCUa-------CUGCauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 15376 0.75 0.311653
Target:  5'- gCGCGCUGGUGAuCGgcuACgagGCCGCCa -3'
miRNA:   3'- gGUGCGGCUACU-GCau-UGa--CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 25951 0.75 0.319188
Target:  5'- gCCugGCCGAgGcCGUugAACagGCCGCCGa -3'
miRNA:   3'- -GGugCGGCUaCuGCA--UUGa-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 45306 0.74 0.334668
Target:  5'- aCCaaGCGCCGcaugGACGc-GCUGCCGCUGg -3'
miRNA:   3'- -GG--UGCGGCua--CUGCauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 12817 0.74 0.334668
Target:  5'- aCGCGcCCGAgGACGgcggcuCUGCUGCCGa -3'
miRNA:   3'- gGUGC-GGCUaCUGCauu---GACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 24934 0.73 0.367248
Target:  5'- aCgGC-CCGGUGGCGcUAccGCUGCCGCCc -3'
miRNA:   3'- -GgUGcGGCUACUGC-AU--UGACGGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.